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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15100 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
KRIT1
ENSSSCG00000015313
ENSG00000001631
KRIT1, ankyrin repeat containing
Low tissue specificity
Detected in all
KRR1
ENSSSCG00000033524
ENSG00000111615
KRR1, small subunit processome component homolog
Low tissue specificity
Detected in all
KRT18
ENSSSCG00000000253
ENSG00000111057
Keratin 18
Tissue enhanced
Detected in many
gallbladder:
41.8
male glands:
48.4
salivary gland:
54.6
KRT20
ENSSSCG00000017459
ENSG00000171431
Keratin 20
Tissue enhanced
Detected in many
gallbladder:
36.3
large intestine:
157.2
small intestine:
66.8
KRT24
ENSSSCG00000017465
ENSG00000167916
Keratin 24
Tissue enriched
Detected in many
mouth:
79.2
KRT27
ENSSSCG00000017462
ENSG00000171446
Keratin, type I cytoskeletal 27
Group enriched
Detected in many
brain:
37.1
skin:
80.0
KRT5
ENSSSCG00000000248
ENSG00000186081
Keratin 5
Group enriched
Detected in many
cornea:
115.8
mouth:
325.7
skin:
162.7
KRT8
ENSSSCG00000000252
ENSG00000170421
Keratin, type II cytoskeletal 8
Tissue enhanced
Detected in many
gallbladder:
64.3
large intestine:
167.1
stomach:
63.3
KRT80
ENSSSCG00000040636
ENSG00000167767
Keratin 80
Tissue enhanced
Detected in all
salivary gland:
44.8
KRTCAP2
ENSSSCG00000006527
ENSG00000163463
Keratinocyte-associated protein 2
Low tissue specificity
Detected in all
KRTCAP3
ENSSSCG00000040062
ENSG00000157992
Keratinocyte associated protein 3
Low tissue specificity
Detected in all
KSR1
ENSSSCG00000017753
ENSG00000141068
Kinase suppressor of ras 1
Low tissue specificity
Detected in all
KTN1
ENSSSCG00000005060
ENSG00000126777
Kinectin
Low tissue specificity
Detected in all
KXD1
ENSSSCG00000013906
ENSG00000105700
KxDL motif containing 1
Tissue enhanced
Detected in all
lens:
166.0
KYAT1
ENSSSCG00000005663
ENSG00000171097
Kynurenine aminotransferase 1
Tissue enhanced
Detected in all
male glands:
29.7
KYAT3
ENSSSCG00000006925
ENSG00000137944
Kynurenine aminotransferase 3
Low tissue specificity
Detected in all
L2HGDH
ENSSSCG00000005016
ENSG00000087299
L-2-hydroxyglutarate dehydrogenase
Low tissue specificity
Detected in all
L3HYPDH
ENSSSCG00000037854
ENSG00000126790
Trans-L-3-hydroxyproline dehydratase
Low tissue specificity
Detected in all
L3MBTL1
ENSSSCG00000007365
ENSG00000185513
L3MBTL1, histone methyl-lysine binding protein
Tissue enhanced
Detected in many
brain:
14.6
epididymis:
17.9
L3MBTL2
ENSSSCG00000000066
ENSG00000100395
L3MBTL2, polycomb repressive complex 1 subunit
Low tissue specificity
Detected in all
L3MBTL3
ENSSSCG00000004203
ENSG00000198945
L3MBTL3, histone methyl-lysine binding protein
Tissue enhanced
Detected in all
cartilage:
41.4
L3MBTL4
ENSSSCG00000035553
ENSG00000154655
L3MBTL4, histone methyl-lysine binding protein
Tissue enhanced
Detected in many
lens:
9.7
pituitary gland:
9.9
salivary gland:
9.3
LACTB
ENSSSCG00000004569
ENSG00000103642
Serine beta-lactamase-like protein LACTB, mitochondrial
Tissue enhanced
Detected in all
adrenal gland:
36.1
liver:
32.5
LACTB2
ENSSSCG00000006192
ENSG00000147592
Endoribonuclease LACTB2
Low tissue specificity
Detected in all
LAMA1
ENSSSCG00000034767
ENSG00000101680
Laminin subunit alpha 1
Group enriched
Detected in many
lens:
68.3
ovary:
34.5
LAMA2
ENSSSCG00000033894
ENSG00000196569
Laminin subunit alpha 2
Tissue enhanced
Detected in many
heart:
52.7
synovial tissue:
48.0
LAMA4
ENSSSCG00000004425
ENSG00000112769
Laminin subunit alpha 4
Low tissue specificity
Detected in many
LAMA5
ENSSSCG00000032761
ENSG00000130702
Laminin subunit alpha 5
Low tissue specificity
Detected in all
LAMB1
ENSSSCG00000015444
ENSG00000091136
Laminin subunit beta 1
Low tissue specificity
Detected in all
LAMB2
ENSSSCG00000011377
ENSG00000172037
Laminin subunit beta 2
Low tissue specificity
Detected in all
LAMC1
ENSSSCG00000015555
ENSG00000135862
Laminin subunit gamma-1 precursor
Low tissue specificity
Detected in all
LAMC2
ENSSSCG00000015556
ENSG00000058085
Laminin subunit gamma 2
Tissue enhanced
Detected in many
stomach:
44.7
LAMC3
ENSSSCG00000005710
ENSG00000050555
Laminin subunit gamma 3
Tissue enhanced
Detected in many
penis:
26.8
LAMP1
ENSSSCG00000009555
ENSG00000185896
Lysosome-associated membrane glycoprotein 1 precursor
Low tissue specificity
Detected in all
LAMP2
ENSSSCG00000012604
ENSG00000005893
Lysosome-associated membrane glycoprotein 2 isoform 1 precursor
Low tissue specificity
Detected in all
LAMP3
ENSSSCG00000026097
ENSG00000078081
Lysosomal associated membrane protein 3
Group enriched
Detected in many
lung:
97.7
lymphoid tissue:
55.1
LAMTOR1
ENSSSCG00000014804
ENSG00000149357
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1
Low tissue specificity
Detected in all
LAMTOR2
ENSSSCG00000006499
ENSG00000116586
Ragulator complex protein LAMTOR2
Low tissue specificity
Detected in all
LAMTOR3
ENSSSCG00000009176
ENSG00000109270
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 3
Low tissue specificity
Detected in all
LAMTOR4
ENSSSCG00000007646
ENSG00000188186
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 4
Low tissue specificity
Detected in all
LANCL1
ENSSSCG00000016158
ENSG00000115365
LanC like 1
Tissue enhanced
Detected in all
brain:
39.9
LANCL2
ENSSSCG00000023801
ENSG00000132434
LanC like 2
Low tissue specificity
Detected in all
LAP3
ENSSSCG00000023604
ENSG00000002549
Leucine aminopeptidase 3
Tissue enhanced
Detected in all
lens:
115.7
LAPTM4A
ENSSSCG00000008602
ENSG00000068697
Lysosomal protein transmembrane 4 alpha
Low tissue specificity
Detected in all
LAPTM4B
ENSSSCG00000006083
ENSG00000104341
Lysosomal protein transmembrane 4 beta
Tissue enhanced
Detected in all
ovary:
92.8
retina:
106.6
LAPTM5
ENSSSCG00000025034
ENSG00000162511
Lysosomal protein transmembrane 5
Tissue enhanced
Detected in many
lymphoid tissue:
82.6
LARGE2
ENSSSCG00000013266
ENSG00000165905
LARGE xylosyl- and glucuronyltransferase 2
Tissue enhanced
Detected in many
male glands:
53.5
salivary gland:
35.3
LARP1
ENSSSCG00000017069
ENSG00000155506
La ribonucleoprotein domain family member 1
Low tissue specificity
Detected in all
LARP1B
ENSSSCG00000034280
ENSG00000138709
La ribonucleoprotein domain family member 1B
Tissue enhanced
Detected in all
liver:
44.3
testis:
67.6
LARP4
ENSSSCG00000028516
ENSG00000161813
La ribonucleoprotein domain family member 4
Tissue enhanced
Detected in all
lens:
74.1
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