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UMAP gene cluster
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Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
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Breast
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Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
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Esophagus
Fallopian tube
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Heart
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Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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14558 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ITGAE
ENSSSCG00000017869
ENSG00000083457
Integrin subunit alpha E
Tissue enhanced
Detected in many
lens:
57.9
lymphoid tissue:
25.9
ITGAL
ENSSSCG00000007797
ENSG00000005844
Integrin alpha-L precursor
Tissue enhanced
Detected in many
lymphoid tissue:
49.4
stomach:
27.1
ITGAV
ENSSSCG00000016027
ENSG00000138448
Integrin alpha-V precursor
Tissue enhanced
Detected in all
ovary:
65.8
ITGAX
ENSSSCG00000007754
ENSG00000140678
Integrin subunit alpha X
Tissue enhanced
Detected in all
lymphoid tissue:
83.4
ITGB1
ENSSSCG00000011101
ENSG00000150093
Integrin beta-1 precursor
Low tissue specificity
Detected in all
ITGB1BP1
ENSSSCG00000029313
ENSG00000119185
Integrin subunit beta 1 binding protein 1
Low tissue specificity
Detected in all
ITGB1BP2
ENSSSCG00000022209
ENSG00000147166
Integrin beta-1-binding protein 2
Group enriched
Detected in many
heart:
33.1
skeletal muscle:
27.7
smooth muscle:
20.9
ITGB2
ENSSSCG00000025133
ENSG00000160255
Integrin beta-2 precursor
Tissue enhanced
Detected in all
lymphoid tissue:
71.8
ITGB3
ENSSSCG00000017306
ENSG00000259207
Integrin beta-3 precursor
Tissue enhanced
Detected in all
dura mater:
31.3
ovary:
30.1
ITGB4
ENSSSCG00000017204
ENSG00000132470
Integrin subunit beta 4
Tissue enhanced
Detected in many
vagus nerve:
116.2
ITGB5
ENSSSCG00000037905
ENSG00000082781
Integrin beta-5 precursor
Low tissue specificity
Detected in all
ITGB8
ENSSSCG00000015375
ENSG00000105855
Integrin beta-8 precursor
Tissue enhanced
Detected in many
brain:
49.6
vagus nerve:
60.5
ITIH1
ENSSSCG00000011450
ENSG00000055957
Inter-alpha-trypsin inhibitor heavy chain 1
Tissue enriched
Detected in all
liver:
234.9
ITIH3
ENSSSCG00000011451
ENSG00000162267
Inter-alpha-trypsin inhibitor heavy chain H3 precursor
Tissue enriched
Detected in many
liver:
105.3
ITIH4
ENSSSCG00000011453
ENSG00000055955
Inter-alpha-trypsin inhibitor heavy chain H4 precursor
Tissue enhanced
Detected in many
cervix:
61.4
liver:
161.3
ITIH5
ENSSSCG00000011129
ENSG00000123243
Inter-alpha-trypsin inhibitor heavy chain family member 5
Low tissue specificity
Detected in all
ITM2A
ENSSSCG00000012448
ENSG00000078596
Integral membrane protein 2A
Low tissue specificity
Detected in all
ITM2B
ENSSSCG00000009403
ENSG00000136156
Integral membrane protein 2B
Tissue enriched
Detected in all
epididymis:
329.8
ITM2C
ENSSSCG00000016267
ENSG00000135916
Integral membrane protein 2C CT-BRI3
Low tissue specificity
Detected in all
ITPA
ENSSSCG00000035995
ENSG00000125877
Inosine triphosphatase
Low tissue specificity
Detected in all
ITPK1
ENSSSCG00000002457
ENSG00000100605
Inositol-tetrakisphosphate 1-kinase
Tissue enhanced
Detected in all
stomach:
81.1
ITPKB
ENSSSCG00000040100
ENSG00000143772
Inositol-trisphosphate 3-kinase B
Low tissue specificity
Detected in all
ITPKC
ENSSSCG00000003000
ENSG00000086544
Inositol-trisphosphate 3-kinase C
Low tissue specificity
Detected in all
ITPR1
ENSSSCG00000023437
ENSG00000150995
Inositol 1,4,5-trisphosphate receptor type 1
Tissue enhanced
Detected in all
cervix:
67.1
ITPR2
ENSSSCG00000000555
ENSG00000123104
Inositol 1,4,5-trisphosphate receptor type 2
Low tissue specificity
Detected in many
ITPR3
ENSSSCG00000001518
ENSG00000096433
Inositol 1,4,5-trisphosphate receptor type 3
Tissue enhanced
Detected in many
stomach:
78.1
ITPRIP
ENSSSCG00000010613
ENSG00000148841
Inositol 1,4,5-trisphosphate receptor interacting protein
Tissue enhanced
Detected in many
lymphoid tissue:
39.1
ITPRIPL1
ENSSSCG00000037580
ENSG00000198885
ITPRIP like 1
Low tissue specificity
Detected in all
ITPRIPL2
ENSSSCG00000039337
ENSG00000205730
ITPRIP like 2
Low tissue specificity
Detected in all
ITSN1
ENSSSCG00000024614
ENSG00000205726
Intersectin 1
Low tissue specificity
Detected in all
ITSN2
ENSSSCG00000008583
ENSG00000198399
Intersectin 2
Low tissue specificity
Detected in all
IVD
ENSSSCG00000004774
ENSG00000128928
Isovaleryl-CoA dehydrogenase, mitochondrial
Tissue enhanced
Detected in all
liver:
76.3
IVNS1ABP
ENSSSCG00000015570
ENSG00000116679
Influenza virus NS1A-binding protein
Tissue enhanced
Detected in all
cartilage:
83.1
heart:
87.1
lens:
148.0
IWS1
ENSSSCG00000035410
ENSG00000163166
IWS1, SUPT6H interacting protein
Low tissue specificity
Detected in all
IZUMO1R
ENSSSCG00000014952
ENSG00000183560
IZUMO1 receptor, JUNO
Low tissue specificity
Detected in all
IZUMO2
ENSSSCG00000003207
ENSG00000161652
IZUMO family member 2
Tissue enhanced
Detected in many
testis:
28.4
IZUMO4
ENSSSCG00000013455
ENSG00000099840
IZUMO family member 4
Tissue enriched
Detected in many
testis:
165.6
JADE1
ENSSSCG00000009071
ENSG00000077684
Jade family PHD finger 1
Low tissue specificity
Detected in all
JADE2
ENSSSCG00000014303
ENSG00000043143
Jade family PHD finger 2
Low tissue specificity
Detected in all
JADE3
ENSSSCG00000012267
ENSG00000102221
Jade family PHD finger 3
Low tissue specificity
Detected in all
JAG1
ENSSSCG00000007067
ENSG00000101384
Jagged 1
Low tissue specificity
Detected in all
JAG2
ENSSSCG00000002555
ENSG00000184916
Jagged 2
Low tissue specificity
Detected in many
JAGN1
ENSSSCG00000032623
ENSG00000171135
Jagunal homolog 1
Low tissue specificity
Detected in all
JAK1
ENSSSCG00000003809
ENSG00000162434
Tyrosine-protein kinase JAK1
Low tissue specificity
Detected in all
JAK2
ENSSSCG00000005215
ENSG00000096968
Tyrosine-protein kinase JAK2
Low tissue specificity
Detected in all
JAK3
ENSSSCG00000013888
ENSG00000105639
Janus kinase 3
Tissue enhanced
Detected in many
lymphoid tissue:
34.3
JAKMIP3
ENSSSCG00000024633
ENSG00000188385
Janus kinase and microtubule interacting protein 3
Tissue enriched
Detected in many
brain:
19.2
JAM2
ENSSSCG00000023028
ENSG00000154721
Junctional adhesion molecule 2
Tissue enhanced
Detected in all
brain:
42.6
dura mater:
46.8
JAM3
ENSSSCG00000015256
ENSG00000166086
Junctional adhesion molecule 3
Tissue enhanced
Detected in all
brain:
51.8
lens:
42.1
JAML
ENSSSCG00000015089
ENSG00000160593
Junctional adhesion molecule-like precursor
Tissue enhanced
Detected in many
brain:
38.7
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