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Keyword
Chromosome
1
2
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6
7
8
9
10
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12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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14558 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SSBP3
ENSSSCG00000039594
ENSG00000157216
Single stranded DNA binding protein 3
Low tissue specificity
Detected in all
SSBP4
ENSSSCG00000025955
ENSG00000130511
Single stranded DNA binding protein 4
Low tissue specificity
Detected in all
SSC5D
ENSSSCG00000037450
ENSG00000179954
Scavenger receptor cysteine rich family member with 5 domains
Tissue enhanced
Detected in all
adipose tissue:
52.0
cartilage:
57.7
SSFA2
ENSSSCG00000038730
ENSG00000138434
Sperm specific antigen 2
Low tissue specificity
Detected in all
SSH1
ENSSSCG00000009943
ENSG00000084112
Slingshot protein phosphatase 1
Low tissue specificity
Detected in all
SSH2
ENSSSCG00000017791
ENSG00000141298
Slingshot protein phosphatase 2
Tissue enhanced
Detected in all
skeletal muscle:
56.6
SSH3
ENSSSCG00000027956
ENSG00000172830
Slingshot protein phosphatase 3
Low tissue specificity
Detected in many
SSPN
ENSSSCG00000025531
ENSG00000123096
Sarcospan
Tissue enhanced
Detected in many
smooth muscle:
47.9
SSR1
ENSSSCG00000001022
ENSG00000124783
Signal sequence receptor, alpha
Low tissue specificity
Detected in all
SSR2
ENSSSCG00000006501
ENSG00000163479
Signal sequence receptor subunit 2
Low tissue specificity
Detected in all
SSR3
ENSSSCG00000030567
ENSG00000114850
Translocon-associated protein subunit gamma
Low tissue specificity
Detected in all
SSR4
ENSSSCG00000012784
ENSG00000180879
Signal sequence receptor subunit 4
Tissue enhanced
Detected in all
male glands:
127.4
SSRP1
ENSSSCG00000029059
ENSG00000149136
Structure specific recognition protein 1
Low tissue specificity
Detected in all
SSSCA1
ENSSSCG00000020737
ENSG00000173465
Sjogren syndrome/scleroderma autoantigen 1
Low tissue specificity
Detected in all
SST
ENSSSCG00000033815
ENSG00000157005
Somatostatin Somatostatin-28 Somatostatin-14
Tissue enhanced
Detected in many
brain:
31.9
small intestine:
13.8
stomach:
17.6
SSTR2
ENSSSCG00000017249
ENSG00000180616
Somatostatin receptor 2
Low tissue specificity
Detected in all
SSUH2
ENSSSCG00000023082
ENSG00000125046
Ssu-2 homolog (C. elegans)
Tissue enhanced
Detected in many
cartilage:
12.9
epididymis:
16.7
SSX2IP
ENSSSCG00000003757
ENSG00000117155
SSX family member 2 interacting protein
Tissue enhanced
Detected in all
lens:
80.1
ST3GAL1
ENSSSCG00000005943
ENSG00000008513
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase 1
Tissue enhanced
Detected in many
male glands:
52.0
small intestine:
51.7
ST3GAL2
ENSSSCG00000038843
ENSG00000157350
ST3 beta-galactoside alpha-2,3-sialyltransferase 2
Low tissue specificity
Detected in all
ST3GAL3
ENSSSCG00000034059
ENSG00000126091
CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase
Tissue enhanced
Detected in all
lens:
38.4
ST3GAL4
ENSSSCG00000015232
ENSG00000110080
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase 4
Tissue enriched
Detected in many
male glands:
175.5
ST3GAL5
ENSSSCG00000008227
ENSG00000115525
ST3 beta-galactoside alpha-2,3-sialyltransferase 5
Low tissue specificity
Detected in all
ST3GAL6
ENSSSCG00000034493
ENSG00000064225
ST3 beta-galactoside alpha-2,3-sialyltransferase 6
Low tissue specificity
Detected in all
ST5
ENSSSCG00000014568
ENSG00000166444
Suppression of tumorigenicity 5
Low tissue specificity
Detected in all
ST6GAL1
ENSSSCG00000025770
ENSG00000073849
ST6 beta-galactoside alpha-2,6-sialyltransferase 1
Tissue enhanced
Detected in many
liver:
102.6
ST6GALNAC1
ENSSSCG00000017172
ENSG00000070526
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1
Tissue enhanced
Detected in all
male glands:
80.3
ST6GALNAC2
ENSSSCG00000017177
ENSG00000070731
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2
Low tissue specificity
Detected in many
ST6GALNAC3
ENSSSCG00000024494
ENSG00000184005
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
Group enriched
Detected in many
brain:
25.7
cornea:
24.7
ST6GALNAC4
ENSSSCG00000005628
ENSG00000136840
Alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1, 3-N-acetyl-galactosaminide alpha-2,6-sialyltransferase
Tissue enhanced
Detected in all
stomach:
74.8
ST7
ENSSSCG00000016629
ENSG00000004866
Suppressor of tumorigenicity 7 protein
Low tissue specificity
Detected in all
ST7L
ENSSSCG00000006779
ENSG00000007341
Suppression of tumorigenicity 7 like
Low tissue specificity
Detected in all
ST8SIA1
ENSSSCG00000031329
ENSG00000111728
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1
Tissue enhanced
Detected in many
brain:
18.3
lymphoid tissue:
15.9
ST8SIA4
ENSSSCG00000035539
ENSG00000113532
CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase precursor
Tissue enhanced
Detected in many
lymphoid tissue:
30.4
ST8SIA5
ENSSSCG00000032053
ENSG00000101638
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5
Tissue enhanced
Detected in all
adrenal gland:
26.0
brain:
43.6
choroid plexus:
29.2
STAB1
ENSSSCG00000011443
ENSG00000010327
Stabilin 1
Tissue enhanced
Detected in many
synovial tissue:
60.8
STAC
ENSSSCG00000023085
ENSG00000144681
SH3 and cysteine rich domain
Tissue enhanced
Detected in many
ductus deferens:
34.2
STAG1
ENSSSCG00000011652
ENSG00000118007
Stromal antigen 1
Low tissue specificity
Detected in all
STAG2
ENSSSCG00000012642
ENSG00000101972
Stromal antigen 2
Low tissue specificity
Detected in all
STAM
ENSSSCG00000011036
ENSG00000136738
Signal transducing adaptor molecule
Low tissue specificity
Detected in all
STAM2
ENSSSCG00000016399
ENSG00000115145
Signal transducing adaptor molecule 2
Low tissue specificity
Detected in all
STAMBP
ENSSSCG00000008300
ENSG00000124356
STAM binding protein
Low tissue specificity
Detected in all
STARD10
ENSSSCG00000014818
ENSG00000214530
PCTP-like protein
Tissue enhanced
Detected in all
liver:
54.9
stomach:
74.4
STARD13
ENSSSCG00000009348
ENSG00000133121
StAR related lipid transfer domain containing 13
Tissue enhanced
Detected in all
cartilage:
61.3
STARD3
ENSSSCG00000017499
ENSG00000131748
StAR-related lipid transfer protein 3
Low tissue specificity
Detected in all
STARD3NL
ENSSSCG00000024028
ENSG00000010270
MLN64 N-terminal domain homolog
Low tissue specificity
Detected in all
STARD5
ENSSSCG00000001788
ENSG00000172345
StAR related lipid transfer domain containing 5
Tissue enhanced
Detected in many
skin:
20.5
STARD7
ENSSSCG00000008132
ENSG00000084090
StAR related lipid transfer domain containing 7
Tissue enhanced
Detected in all
heart:
43.2
retina:
36.7
STARD8
ENSSSCG00000012828
ENSG00000130052
StAR related lipid transfer domain containing 8
Tissue enhanced
Detected in many
kidney:
39.0
lymphoid tissue:
32.9
STARD9
ENSSSCG00000022039
ENSG00000159433
StAR related lipid transfer domain containing 9
Tissue enhanced
Detected in all
vagus nerve:
46.1
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