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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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15887 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
LMBRD1
ENSSSCG00000004272
ENSG00000168216
LMBR1 domain containing 1
Tissue enhanced
Detected in all
brain:
38.6
LMBRD2
ENSSSCG00000016834
ENSG00000164187
LMBR1 domain containing 2
Low tissue specificity
Detected in all
LMCD1
ENSSSCG00000011538
ENSG00000071282
LIM and cysteine-rich domains protein 1
Tissue enhanced
Detected in many
skeletal muscle:
57.1
LMF1
ENSSSCG00000008009
ENSG00000103227
Lipase maturation factor 1
Low tissue specificity
Detected in all
LMF2
ENSSSCG00000000964
ENSG00000100258
Lipase maturation factor 2
Low tissue specificity
Detected in all
LMLN
ENSSSCG00000011857
ENSG00000185621
Leishmanolysin like peptidase
Low tissue specificity
Detected in many
LMNA
ENSSSCG00000006496
ENSG00000160789
Prelamin-A/C
Low tissue specificity
Detected in many
LMNB1
ENSSSCG00000014248
ENSG00000113368
Lamin B1
Tissue enhanced
Detected in all
lymphoid tissue:
52.3
LMNB2
ENSSSCG00000026784
ENSG00000176619
Lamin B2
Low tissue specificity
Detected in all
LMNTD1
ENSSSCG00000027144
ENSG00000152936
Lamin tail domain containing 1
Tissue enhanced
Detected in all
epididymis:
47.9
LMO1
ENSSSCG00000023057
ENSG00000166407
Rhombotin-1
Tissue enhanced
Detected in many
brain:
17.4
breast:
10.1
LMO2
ENSSSCG00000013307
ENSG00000135363
LIM domain only 2
Low tissue specificity
Detected in many
LMO4
ENSSSCG00000006928
ENSG00000143013
LIM domain transcription factor LMO4
Tissue enhanced
Detected in all
heart:
94.7
LMO7
ENSSSCG00000040184
ENSG00000136153
LIM domain 7
Tissue enhanced
Detected in many
heart:
81.5
LMOD1
ENSSSCG00000031201
ENSG00000163431
Leiomodin 1
Tissue enhanced
Detected in many
cervix:
83.2
smooth muscle:
104.3
LMOD3
ENSSSCG00000011508
ENSG00000163380
Leiomodin 3
Tissue enriched
Detected in some
skeletal muscle:
118.3
LMTK2
ENSSSCG00000007599
ENSG00000164715
Lemur tyrosine kinase 2
Low tissue specificity
Detected in all
LMTK3
ENSSSCG00000030561
ENSG00000142235
Lemur tyrosine kinase 3
Tissue enhanced
Detected in some
brain:
24.9
retina:
7.8
LMX1A
ENSSSCG00000006329
ENSG00000162761
LIM homeobox transcription factor 1 alpha
Group enriched
Detected in many
choroid plexus:
56.9
pineal gland:
31.0
LMX1B
ENSSSCG00000035968
ENSG00000136944
LIM homeobox transcription factor 1-beta
Tissue enhanced
Detected in some
breast:
15.4
cornea:
29.1
LNPEP
ENSSSCG00000014173
ENSG00000113441
Leucyl-cystinyl aminopeptidase
Low tissue specificity
Detected in all
LNX1
ENSSSCG00000008838
ENSG00000072201
Ligand of numb-protein X 1
Tissue enhanced
Detected in many
brain:
26.7
male glands:
27.7
LNX2
ENSSSCG00000009308
ENSG00000139517
Ligand of numb-protein X 2
Low tissue specificity
Detected in all
LONP1
ENSSSCG00000027128
ENSG00000196365
Lon protease homolog, mitochondrial
Tissue enhanced
Detected in all
adrenal gland:
58.0
LONP2
ENSSSCG00000023391
ENSG00000102910
Lon peptidase 2, peroxisomal
Low tissue specificity
Detected in all
LONRF1
ENSSSCG00000006968
ENSG00000154359
LON peptidase N-terminal domain and ring finger 1
Low tissue specificity
Detected in all
LONRF2
ENSSSCG00000008176
ENSG00000170500
LON peptidase N-terminal domain and ring finger 2
Tissue enhanced
Detected in all
brain:
17.0
epididymis:
18.6
LONRF3
ENSSSCG00000012631
ENSG00000175556
LON peptidase N-terminal domain and ring finger 3
Low tissue specificity
Detected in all
LOX
ENSSSCG00000014232
ENSG00000113083
Protein-lysine 6-oxidase precursor
Tissue enhanced
Detected in many
cartilage:
54.1
ovary:
44.2
LOXL1
ENSSSCG00000001914
ENSG00000129038
Lysyl oxidase like 1
Tissue enhanced
Detected in all
choroid plexus:
55.0
LOXL2
ENSSSCG00000033608
ENSG00000134013
Lysyl oxidase like 2
Tissue enhanced
Detected in many
cartilage:
85.0
LOXL3
ENSSSCG00000008266
ENSG00000115318
Lysyl oxidase like 3
Tissue enriched
Detected in many
cartilage:
82.9
LOXL4
ENSSSCG00000010532
ENSG00000138131
Lysyl oxidase like 4
Group enriched
Detected in many
cartilage:
29.1
ovary:
36.9
LPAR2
ENSSSCG00000013932
ENSG00000064547
Lysophosphatidic acid receptor 2
Tissue enhanced
Detected in many
male glands:
16.3
stomach:
21.5
LPAR3
ENSSSCG00000003756
ENSG00000171517
Lysophosphatidic acid receptor 3
Tissue enhanced
Detected in many
fallopian tube:
14.0
lung:
11.7
upper respiratory system:
13.2
LPAR4
ENSSSCG00000012445
ENSG00000147145
Lysophosphatidic acid receptor 4
Tissue enhanced
Detected in many
adipose tissue:
7.1
cartilage:
6.3
lymphoid tissue:
10.4
LPAR5
ENSSSCG00000000699
ENSG00000184574
Lysophosphatidic acid receptor 5
Tissue enhanced
Detected in many
lymphoid tissue:
23.0
stomach:
17.5
LPAR6
ENSSSCG00000036063
ENSG00000139679
Lysophosphatidic acid receptor 6
Low tissue specificity
Detected in all
LPCAT1
ENSSSCG00000017116
ENSG00000153395
Lysophosphatidylcholine acyltransferase 1
Tissue enhanced
Detected in all
lung:
33.7
LPCAT2
ENSSSCG00000002828
ENSG00000087253
Lysophosphatidylcholine acyltransferase 2
Low tissue specificity
Detected in all
LPCAT3
ENSSSCG00000027205
ENSG00000111684
Lysophosphatidylcholine acyltransferase 3
Low tissue specificity
Detected in all
LPCAT4
ENSSSCG00000002235
ENSG00000176454
Lysophospholipid acyltransferase LPCAT4
Low tissue specificity
Detected in all
LPGAT1
ENSSSCG00000015603
ENSG00000123684
Lysophosphatidylglycerol acyltransferase 1
Low tissue specificity
Detected in all
LPIN1
ENSSSCG00000008624
ENSG00000134324
Phosphatidate phosphatase LPIN1
Tissue enhanced
Detected in all
adipose tissue:
75.1
LPIN2
ENSSSCG00000038494
ENSG00000101577
Phosphatidate phosphatase LPIN2
Tissue enhanced
Detected in all
liver:
56.1
LPIN3
ENSSSCG00000007359
ENSG00000132793
Phosphatidate phosphatase LPIN3
Low tissue specificity
Detected in many
LPL
ENSSSCG00000040631
ENSG00000175445
Lipoprotein lipase precursor
Tissue enhanced
Detected in many
adipose tissue:
134.0
aorta:
89.4
bone marrow:
101.4
LPO
ENSSSCG00000017636
ENSG00000167419
Lactoperoxidase
Group enriched
Detected in many
esophagus:
97.1
salivary gland:
80.3
LPP
ENSSSCG00000011811
ENSG00000145012
LIM domain containing preferred translocation partner in lipoma
Tissue enhanced
Detected in all
smooth muscle:
113.7
LRAT
ENSSSCG00000008995
ENSG00000121207
Lecithin retinol acyltransferase
Low tissue specificity
Detected in all
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