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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15368 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CASS4
ENSSSCG00000007495
ENSG00000087589
Cas scaffolding protein family member 4
Low tissue specificity
Detected in all
CAST
ENSSSCG00000014170
ENSG00000153113
Calpastatin
Low tissue specificity
Detected in all
CASTOR1
ENSSSCG00000009998
ENSG00000239282
Cytosolic arginine sensor for mTORC1 subunit 1
Low tissue specificity
Detected in all
CASZ1
ENSSSCG00000003407
ENSG00000130940
Castor zinc finger 1
Tissue enhanced
Detected in many
skin:
52.2
CAT
ENSSSCG00000013302
ENSG00000121691
Catalase
Tissue enhanced
Detected in many
liver:
269.9
CATIP
ENSSSCG00000016187
ENSG00000158428
Ciliogenesis-associated TTC17-interacting protein
Low tissue specificity
Detected in all
CATSPER4
ENSSSCG00000026526
ENSG00000188782
Cation channel sperm-associated protein 4
Tissue enhanced
Detected in many
skeletal muscle:
19.7
testis:
15.4
CATSPERE
ENSSSCG00000035850
ENSG00000179397
Catsper channel auxiliary subunit epsilon
Tissue enhanced
Detected in many
testis:
19.1
CATSPERG
ENSSSCG00000002955
ENSG00000099338
Cation channel sperm associated auxiliary subunit gamma
Tissue enhanced
Detected in all
testis:
62.0
CAV1
ENSSSCG00000016634
ENSG00000105974
Caveolin-1 isoform a
Tissue enhanced
Detected in many
penis:
98.1
CAV2
ENSSSCG00000016635
ENSG00000105971
Caveolin-2
Low tissue specificity
Detected in many
CAVIN1
ENSSSCG00000035446
ENSG00000177469
Caveolae associated protein 1
Low tissue specificity
Detected in many
CAVIN2
ENSSSCG00000026618
ENSG00000168497
Caveolae associated protein 2
Tissue enhanced
Detected in many
smooth muscle:
63.8
CAVIN3
ENSSSCG00000014633
ENSG00000170955
Caveolae associated protein 3
Low tissue specificity
Detected in many
CBFA2T2
ENSSSCG00000027410
ENSG00000078699
CBFA2/RUNX1 translocation partner 2
Low tissue specificity
Detected in all
CBFA2T3
ENSSSCG00000002648
ENSG00000129993
CBFA2/RUNX1 translocation partner 3
Low tissue specificity
Detected in many
CBFB
ENSSSCG00000033811
ENSG00000067955
Core-binding factor beta subunit
Low tissue specificity
Detected in all
CBL
ENSSSCG00000015115
ENSG00000110395
Cbl proto-oncogene
Tissue enhanced
Detected in all
lymphoid tissue:
74.6
CBLB
ENSSSCG00000022486
ENSG00000114423
Cbl proto-oncogene B
Low tissue specificity
Detected in all
CBLC
ENSSSCG00000003083
ENSG00000142273
Cbl proto-oncogene C
Low tissue specificity
Detected in all
CBLL1
ENSSSCG00000028585
ENSG00000105879
Cbl proto-oncogene like 1
Low tissue specificity
Detected in all
CBR1
ENSSSCG00000031111
ENSG00000159228
Carbonyl reductase [NADPH] 1
Group enriched
Detected in some
breast:
86.7
cartilage:
22.4
esophagus:
50.2
salivary gland:
34.5
CBR3
ENSSSCG00000012053
ENSG00000159231
Carbonyl reductase
Low tissue specificity
Detected in all
CBR4
ENSSSCG00000009717
ENSG00000145439
Carbonyl reductase 4
Low tissue specificity
Detected in all
CBX2
ENSSSCG00000024261
ENSG00000173894
Chromobox 2
Low tissue specificity
Detected in all
CBX4
ENSSSCG00000017160
ENSG00000141582
Chromobox 4
Low tissue specificity
Detected in all
CBX5
ENSSSCG00000039191
ENSG00000094916
Chromobox 5
Low tissue specificity
Detected in all
CBX6
ENSSSCG00000040334
ENSG00000183741
Chromobox 6
Low tissue specificity
Detected in all
CBX7
ENSSSCG00000000090
ENSG00000100307
Chromobox 7
Low tissue specificity
Detected in all
CBX8
ENSSSCG00000034146
ENSG00000141570
Chromobox protein homolog 8
Low tissue specificity
Detected in all
CC2D1A
ENSSSCG00000013761
ENSG00000132024
Coiled-coil and C2 domain-containing protein 1A
Low tissue specificity
Detected in all
CC2D1B
ENSSSCG00000003862
ENSG00000154222
Coiled-coil and C2 domain containing 1B
Low tissue specificity
Detected in all
CC2D2A
ENSSSCG00000008738
ENSG00000048342
Coiled-coil and C2 domain containing 2A
Low tissue specificity
Detected in all
CCAR1
ENSSSCG00000010243
ENSG00000060339
Cell division cycle and apoptosis regulator 1
Low tissue specificity
Detected in all
CCAR2
ENSSSCG00000009628
ENSG00000158941
Cell cycle and apoptosis regulator protein 2
Low tissue specificity
Detected in all
CCDC102A
ENSSSCG00000028723
ENSG00000135736
Coiled-coil domain containing 102A
Low tissue specificity
Detected in many
CCDC106
ENSSSCG00000035081
ENSG00000173581
Coiled-coil domain containing 106
Tissue enhanced
Detected in all
brain:
33.9
CCDC107
ENSSSCG00000005313
ENSG00000159884
Coiled-coil domain containing 107
Tissue enhanced
Detected in all
male glands:
305.8
CCDC110
ENSSSCG00000015795
ENSG00000168491
Coiled-coil domain containing 110
Tissue enriched
Detected in many
testis:
65.6
CCDC114
ENSSSCG00000026689
ENSG00000105479
Coiled-coil domain containing 114
Tissue enhanced
Detected in many
choroid plexus:
27.8
fallopian tube:
35.7
lung:
33.0
CCDC115
ENSSSCG00000035628
ENSG00000136710
Coiled-coil domain containing 115
Low tissue specificity
Detected in all
CCDC117
ENSSSCG00000032261
ENSG00000159873
Coiled-coil domain containing 117
Low tissue specificity
Detected in all
CCDC120
ENSSSCG00000012288
ENSG00000147144
Coiled-coil domain containing 120
Tissue enhanced
Detected in many
stomach:
48.1
CCDC122
ENSSSCG00000009426
ENSG00000151773
Coiled-coil domain containing 122
Low tissue specificity
Detected in all
CCDC124
ENSSSCG00000013891
ENSG00000007080
Coiled-coil domain containing 124
Low tissue specificity
Detected in all
CCDC125
ENSSSCG00000016963
ENSG00000183323
Coiled-coil domain containing 125
Low tissue specificity
Detected in all
CCDC126
ENSSSCG00000029174
ENSG00000169193
Coiled-coil domain containing 126
Tissue enhanced
Detected in all
pineal gland:
42.0
retina:
37.1
CCDC127
ENSSSCG00000036783
ENSG00000164366
Coiled-coil domain-containing protein 127
Low tissue specificity
Detected in all
CCDC129
ENSSSCG00000016671
ENSG00000180347
Coiled-coil domain containing 129
Tissue enhanced
Detected in many
epididymis:
18.5
salivary gland:
34.8
upper respiratory system:
27.9
CCDC130
ENSSSCG00000013755
ENSG00000104957
Coiled-coil domain containing 130
Tissue enhanced
Detected in all
testis:
64.1
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