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MT
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
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Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
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Heart
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Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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15368 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SOX8
ENSSSCG00000037970
ENSG00000005513
SRY-box 8
Tissue enhanced
Detected in many
brain:
46.0
cartilage:
42.6
vagus nerve:
45.0
SOX9
ENSSSCG00000017251
ENSG00000125398
SRY-box 9
Tissue enriched
Detected in many
cartilage:
161.2
SP1
ENSSSCG00000000272
ENSG00000185591
Sp1 transcription factor
Low tissue specificity
Detected in all
SP110
ENSSSCG00000016261
ENSG00000135899
SP110 nuclear body protein
Tissue enhanced
Detected in many
lymphoid tissue:
50.7
SP2
ENSSSCG00000017516
ENSG00000167182
Sp2 transcription factor
Low tissue specificity
Detected in all
SP3
ENSSSCG00000015962
ENSG00000172845
Sp3 transcription factor
Low tissue specificity
Detected in all
SP4
ENSSSCG00000015378
ENSG00000105866
Sp4 transcription factor
Low tissue specificity
Detected in all
SP5
ENSSSCG00000038355
ENSG00000204335
Sp5 transcription factor
Tissue enhanced
Detected in many
gallbladder:
20.2
SP7
ENSSSCG00000034328
ENSG00000170374
Sp7 transcription factor
Group enriched
Detected in many
bone marrow:
15.2
brain:
11.4
cartilage:
23.7
dura mater:
28.3
SPAAR
ENSSSCG00000035872
ENSG00000235387
Small regulatory polypeptide of amino acid response
Tissue enhanced
Detected in many
adipose tissue:
45.9
heart:
42.6
SPACA6
ENSSSCG00000003238
ENSG00000182310
Sperm acrosome associated 6
Low tissue specificity
Detected in all
SPAG1
ENSSSCG00000027587
ENSG00000104450
Sperm associated antigen 1
Tissue enhanced
Detected in all
choroid plexus:
34.9
testis:
48.1
SPAG4
ENSSSCG00000007305
ENSG00000061656
Sperm associated antigen 4
Tissue enriched
Detected in many
testis:
42.4
SPAG8
ENSSSCG00000025842
ENSG00000137098
Sperm associated antigen 8
Low tissue specificity
Detected in all
SPAG9
ENSSSCG00000033228
ENSG00000008294
Sperm associated antigen 9
Low tissue specificity
Detected in all
SPARC
ENSSSCG00000017082
ENSG00000113140
SPARC precursor
Tissue enhanced
Detected in all
cartilage:
551.7
SPARCL1
ENSSSCG00000009222
ENSG00000152583
SPARC-like protein 1 precursor
Tissue enhanced
Detected in all
cervix:
136.6
smooth muscle:
134.5
SPART
ENSSSCG00000024635
ENSG00000133104
Spartin
Tissue enhanced
Detected in all
lens:
64.6
SPAST
ENSSSCG00000008517
ENSG00000021574
Spastin
Low tissue specificity
Detected in all
SPATA1
ENSSSCG00000029882
ENSG00000122432
Spermatogenesis associated 1
Tissue enhanced
Detected in all
smooth muscle:
29.9
SPATA17
ENSSSCG00000029778
ENSG00000162814
Spermatogenesis-associated protein 17
Tissue enhanced
Detected in many
epididymis:
24.3
fallopian tube:
33.2
testis:
30.9
SPATA2
ENSSSCG00000033324
ENSG00000158480
Spermatogenesis associated 2
Low tissue specificity
Detected in all
SPATA20
ENSSSCG00000017565
ENSG00000006282
Spermatogenesis-associated protein 20
Tissue enriched
Detected in many
testis:
59.3
SPATA24
ENSSSCG00000014348
ENSG00000170469
Spermatogenesis-associated protein 24
Tissue enhanced
Detected in all
testis:
67.4
SPATA2L
ENSSSCG00000029339
ENSG00000158792
Spermatogenesis-associated protein 2-like protein
Low tissue specificity
Detected in all
SPATA46
ENSSSCG00000006343
ENSG00000171722
Spermatogenesis associated 46
Tissue enhanced
Detected in many
cartilage:
34.1
male glands:
35.5
testis:
44.0
SPATA5
ENSSSCG00000009084
ENSG00000145375
Spermatogenesis-associated protein 5
Low tissue specificity
Detected in all
SPATA5L1
ENSSSCG00000004671
ENSG00000171763
Spermatogenesis-associated protein 5-like protein 1
Low tissue specificity
Detected in all
SPATA6
ENSSSCG00000003881
ENSG00000132122
Spermatogenesis-associated protein 6
Tissue enriched
Detected in all
testis:
100.5
SPATA6L
ENSSSCG00000005221
ENSG00000106686
Spermatogenesis associated 6 like
Tissue enhanced
Detected in all
testis:
69.1
SPATA7
ENSSSCG00000002424
ENSG00000042317
Spermatogenesis-associated protein 7
Tissue enriched
Detected in all
testis:
114.1
SPATS2L
ENSSSCG00000016090
ENSG00000196141
SPATS2-like protein
Tissue enhanced
Detected in all
thyroid gland:
99.1
SPC25
ENSSSCG00000015924
ENSG00000152253
SPC25, NDC80 kinetochore complex component
Low tissue specificity
Detected in all
SPCS1
ENSSSCG00000011447
ENSG00000114902
Signal peptidase complex subunit 1
Tissue enhanced
Detected in all
testis:
75.9
SPCS3
ENSSSCG00000015769
ENSG00000129128
Signal peptidase complex subunit 3
Low tissue specificity
Detected in all
SPDEF
ENSSSCG00000036573
ENSG00000124664
SAM pointed domain-containing Ets transcription factor
Tissue enhanced
Detected in many
esophagus:
34.5
male glands:
76.2
salivary gland:
35.7
SPDYA
ENSSSCG00000008538
ENSG00000163806
Speedy protein A
Tissue enriched
Detected in all
testis:
52.2
SPEF1
ENSSSCG00000007149
ENSG00000101222
Sperm flagellar protein 1
Tissue enhanced
Detected in many
fallopian tube:
29.9
upper respiratory system:
26.3
SPEN
ENSSSCG00000034484
ENSG00000065526
Spen family transcriptional repressor
Low tissue specificity
Detected in all
SPERT
ENSSSCG00000009417
ENSG00000174015
Spermatid associated
Tissue enriched
Detected in many
testis:
115.1
SPG11
ENSSSCG00000004684
ENSG00000104133
SPG11, spatacsin vesicle trafficking associated
Low tissue specificity
Detected in all
SPG21
ENSSSCG00000004544
ENSG00000090487
Maspardin
Tissue enhanced
Detected in all
male glands:
64.5
SPG7
ENSSSCG00000024756
ENSG00000197912
SPG7, paraplegin matrix AAA peptidase subunit
Low tissue specificity
Detected in all
SPHK1
ENSSSCG00000017178
ENSG00000176170
Sphingosine kinase 1
Tissue enhanced
Detected in many
epididymis:
41.9
lens:
21.1
SPHK2
ENSSSCG00000030425
ENSG00000063176
Sphingosine kinase 2
Low tissue specificity
Detected in all
SPI1
ENSSSCG00000013237
ENSG00000066336
Transcription factor PU.1
Tissue enhanced
Detected in many
lung:
52.3
SPICE1
ENSSSCG00000024663
ENSG00000163611
Spindle and centriole associated protein 1
Low tissue specificity
Detected in all
SPIDR
ENSSSCG00000006277
ENSG00000164808
Scaffolding protein involved in DNA repair
Low tissue specificity
Detected in all
SPIN1
ENSSSCG00000035901
ENSG00000106723
Spindlin-1
Low tissue specificity
Detected in all
SPIN3
ENSSSCG00000032692
ENSG00000204271
Spindlin family member 3
Low tissue specificity
Detected in all
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