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Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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18358 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
GABARAPL2
ENSSSCG00000002707
ENSG00000034713
GABA type A receptor associated protein like 2
Tissue enhanced
Detected in all
brain:
60.7
lens:
74.1
pineal gland:
52.4
GABBR1
ENSSSCG00000001242
ENSG00000204681
Gamma-aminobutyric acid type B receptor subunit 1 precursor
Tissue enhanced
Detected in all
brain:
74.5
GABBR2
ENSSSCG00000027558
ENSG00000136928
Gamma-aminobutyric acid type B receptor subunit 2
Tissue enriched
Detected in some
brain:
44.5
GABPA
ENSSSCG00000037655
ENSG00000154727
GA binding protein transcription factor alpha subunit
Low tissue specificity
Detected in all
GABPB1
ENSSSCG00000004645
ENSG00000104064
GA binding protein transcription factor beta subunit 1
Low tissue specificity
Detected in all
GABRA1
ENSSSCG00000023661
ENSG00000022355
Gamma-aminobutyric acid type A receptor alpha1 subunit
Tissue enhanced
Detected in some
brain:
51.1
pineal gland:
20.7
retina:
12.0
GABRA2
ENSSSCG00000028922
ENSG00000151834
Gamma-aminobutyric acid type A receptor alpha2 subunit
Tissue enriched
Detected in some
brain:
50.1
GABRA3
ENSSSCG00000025708
ENSG00000011677
Gamma-aminobutyric acid type A receptor alpha3 subunit
Tissue enriched
Detected in some
brain:
28.9
GABRA4
ENSSSCG00000030515
ENSG00000109158
Gamma-aminobutyric acid type A receptor alpha4 subunit
Tissue enriched
Detected in some
brain:
34.0
GABRA5
ENSSSCG00000004827
ENSG00000186297
Gamma-aminobutyric acid type A receptor alpha5 subunit
Tissue enriched
Detected in some
brain:
41.3
GABRA6
ENSSSCG00000017027
ENSG00000145863
Gamma-aminobutyric acid type A receptor alpha6 subunit
Tissue enriched
Detected in some
brain:
67.3
GABRB1
ENSSSCG00000035621
ENSG00000163288
Gamma-aminobutyric acid type A receptor beta1 subunit
Tissue enhanced
Detected in some
brain:
25.8
epididymis:
11.7
GABRB2
ENSSSCG00000033558
ENSG00000145864
Gamma-aminobutyric acid type A receptor beta2 subunit
Tissue enriched
Detected in some
brain:
55.1
GABRB3
ENSSSCG00000038547
ENSG00000166206
Gamma-aminobutyric acid type A receptor beta3 subunit
Group enriched
Detected in some
brain:
33.5
pineal gland:
16.5
pituitary gland:
18.3
retina:
11.4
GABRD
ENSSSCG00000035018
ENSG00000187730
Gamma-aminobutyric acid type A receptor delta subunit
Tissue enhanced
Detected in some
brain:
30.7
esophagus:
8.3
male glands:
16.6
GABRE
ENSSSCG00000012754
ENSG00000102287
Gamma-aminobutyric acid type A receptor epsilon subunit
Group enriched
Detected in some
adipose tissue:
13.3
brain:
31.4
synovial tissue:
33.7
GABRG1
ENSSSCG00000008809
ENSG00000163285
Gamma-aminobutyric acid type A receptor gamma1 subunit
Group enriched
Detected in some
brain:
38.8
pituitary gland:
11.0
GABRG2
ENSSSCG00000017025
ENSG00000113327
Gamma-aminobutyric acid type A receptor gamma2 subunit
Tissue enhanced
Detected in some
brain:
38.1
pineal gland:
15.9
pituitary gland:
9.1
retina:
10.5
GABRG3
ENSSSCG00000035584
ENSG00000182256
Gamma-aminobutyric acid type A receptor gamma3 subunit
Tissue enhanced
Detected in some
brain:
17.5
cornea:
10.3
thyroid gland:
7.7
GABRP
ENSSSCG00000021902
ENSG00000094755
Gamma-aminobutyric acid type A receptor pi subunit
Tissue enhanced
Detected in all
endometrium:
40.2
GABRQ
ENSSSCG00000012755
ENSG00000268089
Gamma-aminobutyric acid type A receptor theta subunit
Tissue enriched
Detected in some
brain:
26.4
GABRR2
ENSSSCG00000024249
ENSG00000111886
Gamma-aminobutyric acid type A receptor rho2 subunit
Tissue enriched
Detected in some
retina:
66.0
GAD1
ENSSSCG00000022233
ENSG00000128683
Glutamate decarboxylase 1
Tissue enriched
Detected in some
brain:
131.0
GAD2
ENSSSCG00000011060
ENSG00000136750
Glutamate decarboxylase 2
Group enriched
Detected in some
brain:
41.7
retina:
13.6
GADD45A
ENSSSCG00000037066
ENSG00000116717
Growth arrest and DNA damage-inducible protein GADD45 alpha
Tissue enhanced
Detected in many
lens:
32.5
GADD45B
ENSSSCG00000022689
ENSG00000099860
Growth arrest and DNA damage inducible beta
Low tissue specificity
Detected in all
GADD45G
ENSSSCG00000035249
ENSG00000130222
Growth arrest and DNA damage-inducible protein GADD45 gamma
Tissue enhanced
Detected in many
gallbladder:
38.0
GADL1
ENSSSCG00000038607
ENSG00000144644
Glutamate decarboxylase like 1
Group enriched
Detected in some
adipose tissue:
17.7
skeletal muscle:
44.5
GAK
ENSSSCG00000021289
ENSG00000178950
Cyclin G associated kinase
Low tissue specificity
Detected in all
GAL
ENSSSCG00000012883
ENSG00000069482
Galanin peptides preproprotein
Tissue enriched
Detected in some
adrenal gland:
101.7
GAL3ST1
ENSSSCG00000010009
ENSG00000128242
Galactosylceramide sulfotransferase
Tissue enhanced
Detected in many
brain:
27.1
kidney:
20.4
vagus nerve:
23.2
GAL3ST3
ENSSSCG00000028015
ENSG00000175229
Galactose-3-O-sulfotransferase 3
Tissue enhanced
Detected in many
brain:
13.3
epididymis:
15.4
mesothelial tissue:
16.8
GAL3ST4
ENSSSCG00000007648
ENSG00000197093
Galactose-3-O-sulfotransferase 4
Low tissue specificity
Detected in all
GALC
ENSSSCG00000027865
ENSG00000054983
Galactocerebrosidase
Tissue enhanced
Detected in all
testis:
25.0
GALE
ENSSSCG00000027827
ENSG00000117308
UDP-galactose-4-epimerase
Tissue enhanced
Detected in all
male glands:
50.1
stomach:
34.9
GALK1
ENSSSCG00000017203
ENSG00000108479
Galactokinase 1
Low tissue specificity
Detected in all
GALK2
ENSSSCG00000004651
ENSG00000156958
Galactokinase 2
Low tissue specificity
Detected in all
GALM
ENSSSCG00000008486
ENSG00000143891
Aldose 1-epimerase
Low tissue specificity
Detected in all
GALNS
ENSSSCG00000002645
ENSG00000141012
N-acetylgalactosamine-6-sulfatase precursor
Low tissue specificity
Detected in all
GALNT1
ENSSSCG00000003743
ENSG00000141429
Polypeptide N-acetylgalactosaminyltransferase 1
Low tissue specificity
Detected in all
GALNT10
ENSSSCG00000017072
ENSG00000164574
Polypeptide N-acetylgalactosaminyltransferase 10
Low tissue specificity
Detected in all
GALNT11
ENSSSCG00000016430
ENSG00000178234
Polypeptide N-acetylgalactosaminyltransferase 11
Low tissue specificity
Detected in all
GALNT12
ENSSSCG00000005379
ENSG00000119514
Polypeptide N-acetylgalactosaminyltransferase 12
Tissue enhanced
Detected in many
male glands:
101.5
stomach:
29.1
GALNT13
ENSSSCG00000022671
ENSG00000144278
Polypeptide N-acetylgalactosaminyltransferase 13
Group enriched
Detected in many
brain:
36.2
pineal gland:
17.8
pituitary gland:
23.4
retina:
17.7
synovial tissue:
11.8
GALNT14
ENSSSCG00000008524
ENSG00000158089
Polypeptide N-acetylgalactosaminyltransferase 14
Tissue enhanced
Detected in some
brain:
14.8
lens:
7.5
pituitary gland:
7.3
testis:
14.6
thyroid gland:
10.3
GALNT15
ENSSSCG00000011195
ENSG00000131386
Polypeptide N-acetylgalactosaminyltransferase 15 precursor
Tissue enhanced
Detected in all
cartilage:
57.6
penis:
38.6
GALNT16
ENSSSCG00000002306
ENSG00000100626
Polypeptide N-acetylgalactosaminyltransferase 16
Tissue enhanced
Detected in many
adipose tissue:
31.6
GALNT18
ENSSSCG00000013403
ENSG00000110328
Polypeptide N-acetylgalactosaminyltransferase 18
Tissue enriched
Detected in many
cartilage:
84.5
GALNT2
ENSSSCG00000010185
ENSG00000143641
Polypeptide N-acetylgalactosaminyltransferase 2
Tissue enhanced
Detected in all
male glands:
70.3
GALNT3
ENSSSCG00000015907
ENSG00000115339
Polypeptide N-acetylgalactosaminyltransferase 3
Tissue enhanced
Detected in many
male glands:
44.6
testis:
29.6
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