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Keyword
Chromosome
1
2
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6
7
8
9
10
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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18358 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CYP2C42
ENSSSCG00000024537
Cytochrome P450 2C42 precursor
Tissue enhanced
Detected in many
liver:
37.2
small intestine:
46.9
stomach:
40.2
CYP2F1
ENSSSCG00000002994
ENSG00000197446
Cytochrome P450 family 2 subfamily F member 1
Tissue enriched
Detected in many
upper respiratory system:
68.0
CYP2J34
ENSSSCG00000003825
ENSG00000134716
Cytochrome P450, family 2, subfamily J, polypeptide 34
Tissue enhanced
Detected in all
brain:
40.9
lens:
53.1
male glands:
34.2
CYP2R1
ENSSSCG00000013389
ENSG00000186104
Cytochrome P450 family 2 subfamily R member 1
Low tissue specificity
Detected in all
CYP2S1
ENSSSCG00000032803
ENSG00000167600
Cytochrome P450 family 2 subfamily S member 1
Tissue enhanced
Detected in many
stomach:
41.0
CYP2U1
ENSSSCG00000009151
ENSG00000155016
Cytochrome P450 family 2 subfamily U member 1
Low tissue specificity
Detected in all
CYP39A1
ENSSSCG00000001718
ENSG00000146233
Sus scrofa 24-hydroxycholesterol 7-alpha-hydroxylase-like (LOC100738724), mRNA.
Low tissue specificity
Detected in all
CYP3A39
ENSSSCG00000023320
Sus scrofa cytochrome P450 3A39 (CYP3A39), mRNA.
Tissue enriched
Detected in many
liver:
376.2
CYP46A1
ENSSSCG00000002510
ENSG00000036530
Cytochrome P450 family 46 subfamily A member 1
Tissue enriched
Detected in some
brain:
54.2
CYP4V2
ENSSSCG00000032687
ENSG00000145476
Cytochrome P450 family 4 subfamily V member 2
Tissue enhanced
Detected in all
liver:
38.0
CYP51A1
ENSSSCG00000015311
ENSG00000001630
Lanosterol 14-alpha demethylase
Low tissue specificity
Detected in all
CYP7A1
ENSSSCG00000006238
ENSG00000167910
Cholesterol 7-alpha-monooxygenase
Tissue enriched
Detected in many
liver:
82.5
CYP7B1
ENSSSCG00000022092
ENSG00000172817
Cytochrome P450 family 7 subfamily B member 1
Tissue enhanced
Detected in all
liver:
68.1
CYR61
ENSSSCG00000006940
ENSG00000142871
Cysteine rich angiogenic inducer 61
Tissue enhanced
Detected in many
cartilage:
155.3
CYS1
ENSSSCG00000040267
ENSG00000205795
Cystin 1
Low tissue specificity
Detected in all
CYSLTR1
ENSSSCG00000039203
ENSG00000173198
Cysteinyl leukotriene receptor 1
Tissue enhanced
Detected in many
lymphoid tissue:
17.1
CYSLTR2
ENSSSCG00000009399
ENSG00000152207
Cysteinyl leukotriene receptor 2
Low tissue specificity
Detected in all
CYSRT1
ENSSSCG00000005857
ENSG00000197191
Cysteine rich tail 1
Tissue enriched
Detected in many
mouth:
59.0
CYTB
ENSSSCG00000018094
ENSG00000198727
Cytochrome b (mitochondrion)
Tissue enhanced
Detected in all
heart:
1273.8
CYTH1
ENSSSCG00000017167
ENSG00000108669
Cytohesin 1
Low tissue specificity
Detected in all
CYTH3
ENSSSCG00000034768
ENSG00000008256
Cytohesin 3
Low tissue specificity
Detected in all
CYTH4
ENSSSCG00000000130
ENSG00000100055
Cytohesin-4
Tissue enhanced
Detected in many
lymphoid tissue:
30.0
stomach:
28.7
CYTIP
ENSSSCG00000029753
ENSG00000115165
Cytohesin 1 interacting protein
Tissue enhanced
Detected in many
lung:
29.0
lymphoid tissue:
32.3
small intestine:
21.5
CYTL1
ENSSSCG00000008725
ENSG00000170891
Cytokine like 1
Tissue enriched
Detected in some
cartilage:
233.6
CYYR1
ENSSSCG00000037935
ENSG00000166265
Cysteine and tyrosine rich 1
Low tissue specificity
Detected in many
D2HGDH
ENSSSCG00000034101
ENSG00000180902
Galactose-3-O-sulfotransferase 2
Low tissue specificity
Detected in all
DAAM1
ENSSSCG00000005078
ENSG00000100592
Dishevelled associated activator of morphogenesis 1
Low tissue specificity
Detected in all
DAAM2
ENSSSCG00000001595
ENSG00000146122
Dishevelled associated activator of morphogenesis 2
Tissue enhanced
Detected in all
brain:
86.3
DAB1
ENSSSCG00000003833
ENSG00000173406
Disabled homolog 1
Tissue enhanced
Detected in many
brain:
21.4
liver:
21.0
vagus nerve:
14.3
DAB2
ENSSSCG00000016857
ENSG00000153071
DAB2, clathrin adaptor protein
Tissue enhanced
Detected in many
epididymis:
99.6
synovial tissue:
92.7
DAB2IP
ENSSSCG00000005524
ENSG00000136848
DAB2 interacting protein
Low tissue specificity
Detected in all
DACH1
ENSSSCG00000009457
ENSG00000276644
Dachshund family transcription factor 1
Low tissue specificity
Detected in many
DACT1
ENSSSCG00000031856
ENSG00000165617
Dishevelled binding antagonist of beta catenin 1
Low tissue specificity
Detected in many
DACT3
ENSSSCG00000022280
ENSG00000197380
Dishevelled binding antagonist of beta catenin 3
Tissue enhanced
Detected in many
smooth muscle:
47.8
DAD1
ENSSSCG00000002050
ENSG00000129562
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1
Tissue enhanced
Detected in all
male glands:
84.0
DAG1
ENSSSCG00000034357
ENSG00000173402
Dystroglycan 1
Tissue enhanced
Detected in all
vagus nerve:
122.6
DAGLA
ENSSSCG00000013079
ENSG00000134780
Diacylglycerol lipase alpha
Low tissue specificity
Detected in many
DAGLB
ENSSSCG00000027288
ENSG00000164535
Diacylglycerol lipase beta
Low tissue specificity
Detected in all
DALRD3
ENSSSCG00000011370
ENSG00000178149
DALR anticodon binding domain containing 3
Low tissue specificity
Detected in all
DAO
ENSSSCG00000009942
ENSG00000110887
D-amino-acid oxidase
Tissue enhanced
Detected in some
brain:
18.4
kidney:
92.3
liver:
26.6
small intestine:
16.5
DAP3
ENSSSCG00000006507
ENSG00000132676
Death associated protein 3
Low tissue specificity
Detected in all
DAPK1
ENSSSCG00000010949
ENSG00000196730
Death associated protein kinase 1
Low tissue specificity
Detected in all
DAPK2
ENSSSCG00000021588
ENSG00000035664
Death-associated protein kinase 2
Tissue enhanced
Detected in all
heart:
30.1
DAPK3
ENSSSCG00000032170
ENSG00000167657
Death associated protein kinase 3
Tissue enhanced
Detected in all
testis:
66.2
DAPP1
ENSSSCG00000039327
ENSG00000070190
Dual adaptor of phosphotyrosine and 3-phosphoinositides 1
Tissue enhanced
Detected in many
lymphoid tissue:
41.9
upper respiratory system:
23.0
DARS
ENSSSCG00000015689
ENSG00000115866
Aspartyl-tRNA synthetase
Low tissue specificity
Detected in all
DARS2
ENSSSCG00000015492
ENSG00000117593
Aspartyl-tRNA synthetase 2, mitochondrial
Low tissue specificity
Detected in all
DAW1
ENSSSCG00000016255
ENSG00000123977
Dynein assembly factor with WD repeats 1
Tissue enhanced
Detected in some
choroid plexus:
39.1
fallopian tube:
37.7
testis:
56.0
DAXX
ENSSSCG00000001509
ENSG00000204209
Death domain associated protein
Low tissue specificity
Detected in all
DAZAP1
ENSSSCG00000022528
ENSG00000071626
DAZ-associated protein 1
Low tissue specificity
Detected in all
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