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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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18358 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CARMIL2
ENSSSCG00000022722
ENSG00000159753
Capping protein regulator and myosin 1 linker 2
Tissue enhanced
Detected in many
lymphoid tissue:
40.8
CARMIL3
ENSSSCG00000002012
ENSG00000186648
Capping protein regulator and myosin 1 linker 3
Tissue enhanced
Detected in many
brain:
10.1
testis:
14.7
CARNMT1
ENSSSCG00000005271
ENSG00000156017
Carnosine N-methyltransferase 1
Low tissue specificity
Detected in all
CARNS1
ENSSSCG00000012911
ENSG00000172508
Carnosine synthase 1
Tissue enhanced
Detected in many
liver:
32.7
skeletal muscle:
46.1
vagus nerve:
25.5
CARS
ENSSSCG00000012857
ENSG00000110619
Cysteinyl-tRNA synthetase
Low tissue specificity
Detected in all
CARS2
ENSSSCG00000031757
ENSG00000134905
Cysteinyl-tRNA synthetase 2, mitochondrial
Low tissue specificity
Detected in all
CARTPT
ENSSSCG00000016972
ENSG00000164326
Cocaine- and amphetamine-regulated transcript protein precursor
Group enriched
Detected in some
brain:
68.0
retina:
21.4
CASC1
ENSSSCG00000040550
ENSG00000118307
Cancer susceptibility 1
Tissue enhanced
Detected in all
adrenal gland:
34.4
CASC3
ENSSSCG00000017477
ENSG00000108349
Cancer susceptibility 3
Low tissue specificity
Detected in all
CASC4
ENSSSCG00000023996
ENSG00000166734
Cancer susceptibility 4
Low tissue specificity
Detected in all
CASD1
ENSSSCG00000015327
ENSG00000127995
CAS1 domain containing 1
Low tissue specificity
Detected in all
CASK
ENSSSCG00000012253
ENSG00000147044
Calcium/calmodulin dependent serine protein kinase
Low tissue specificity
Detected in all
CASKIN1
ENSSSCG00000033059
ENSG00000167971
CASK interacting protein 1
Tissue enhanced
Detected in many
brain:
21.1
cartilage:
28.5
CASKIN2
ENSSSCG00000040578
ENSG00000177303
CASK interacting protein 2
Tissue enhanced
Detected in all
vagus nerve:
77.2
CASP1
ENSSSCG00000028711
ENSG00000137752
Caspase-1
Tissue enhanced
Detected in many
large intestine:
31.0
small intestine:
29.7
CASP10
ENSSSCG00000026940
ENSG00000003400
Caspase-10
Low tissue specificity
Detected in all
CASP3
ENSSSCG00000034012
ENSG00000164305
Caspase-3
Low tissue specificity
Detected in all
CASP6
ENSSSCG00000009140
ENSG00000138794
Caspase 6
Low tissue specificity
Detected in all
CASP7
ENSSSCG00000032408
ENSG00000165806
Caspase 7
Low tissue specificity
Detected in many
CASP8
ENSSSCG00000028157
ENSG00000064012
Caspase-8
Low tissue specificity
Detected in all
CASP8AP2
ENSSSCG00000004331
ENSG00000118412
Caspase 8 associated protein 2
Low tissue specificity
Detected in all
CASP9
ENSSSCG00000003460
ENSG00000132906
Caspase 9
Low tissue specificity
Detected in all
CASQ1
ENSSSCG00000006390
ENSG00000143318
Calsequestrin-1 precursor
Tissue enriched
Detected in some
skeletal muscle:
270.8
CASQ2
ENSSSCG00000006745
ENSG00000118729
Calsequestrin 2
Tissue enriched
Detected in many
heart:
100.4
CASR
ENSSSCG00000011878
ENSG00000036828
Extracellular calcium-sensing receptor
Tissue enhanced
Detected in all
kidney:
24.5
pituitary gland:
23.8
CASS4
ENSSSCG00000007495
ENSG00000087589
Cas scaffolding protein family member 4
Low tissue specificity
Detected in all
CAST
ENSSSCG00000014170
ENSG00000153113
Calpastatin
Low tissue specificity
Detected in all
CASTOR1
ENSSSCG00000009998
ENSG00000239282
Cytosolic arginine sensor for mTORC1 subunit 1
Low tissue specificity
Detected in all
CASZ1
ENSSSCG00000003407
ENSG00000130940
Castor zinc finger 1
Tissue enhanced
Detected in many
skin:
52.2
CAT
ENSSSCG00000013302
ENSG00000121691
Catalase
Tissue enhanced
Detected in many
liver:
269.9
CATIP
ENSSSCG00000016187
ENSG00000158428
Ciliogenesis-associated TTC17-interacting protein
Low tissue specificity
Detected in all
CATSPER1
ENSSSCG00000012959
ENSG00000175294
Cation channel sperm-associated protein 1
Tissue enriched
Detected in some
testis:
45.3
CATSPER3
ENSSSCG00000028294
ENSG00000152705
Cation channel sperm-associated protein 3
Tissue enriched
Detected in some
testis:
22.6
CATSPERE
ENSSSCG00000035850
ENSG00000179397
Catsper channel auxiliary subunit epsilon
Tissue enhanced
Detected in many
testis:
19.1
CATSPERG
ENSSSCG00000002955
ENSG00000099338
Cation channel sperm associated auxiliary subunit gamma
Tissue enhanced
Detected in all
testis:
62.0
CAV1
ENSSSCG00000016634
ENSG00000105974
Caveolin-1 isoform a
Tissue enhanced
Detected in many
penis:
98.1
CAV2
ENSSSCG00000016635
ENSG00000105971
Caveolin-2
Low tissue specificity
Detected in many
CAVIN1
ENSSSCG00000035446
ENSG00000177469
Caveolae associated protein 1
Low tissue specificity
Detected in many
CAVIN2
ENSSSCG00000026618
ENSG00000168497
Caveolae associated protein 2
Tissue enhanced
Detected in many
smooth muscle:
63.8
CAVIN3
ENSSSCG00000014633
ENSG00000170955
Caveolae associated protein 3
Low tissue specificity
Detected in many
CAVIN4
ENSSSCG00000037954
ENSG00000170681
Caveolae associated protein 4
Tissue enriched
Detected in some
skeletal muscle:
37.9
CBFA2T2
ENSSSCG00000027410
ENSG00000078699
CBFA2/RUNX1 translocation partner 2
Low tissue specificity
Detected in all
CBFA2T3
ENSSSCG00000002648
ENSG00000129993
CBFA2/RUNX1 translocation partner 3
Low tissue specificity
Detected in many
CBFB
ENSSSCG00000033811
ENSG00000067955
Core-binding factor beta subunit
Low tissue specificity
Detected in all
CBL
ENSSSCG00000015115
ENSG00000110395
Cbl proto-oncogene
Tissue enhanced
Detected in all
lymphoid tissue:
74.6
CBLB
ENSSSCG00000022486
ENSG00000114423
Cbl proto-oncogene B
Low tissue specificity
Detected in all
CBLC
ENSSSCG00000003083
ENSG00000142273
Cbl proto-oncogene C
Low tissue specificity
Detected in all
CBLL1
ENSSSCG00000028585
ENSG00000105879
Cbl proto-oncogene like 1
Low tissue specificity
Detected in all
CBLN1
ENSSSCG00000040652
ENSG00000102924
Cerebellin-1 precursor
Tissue enriched
Detected in some
brain:
84.6
CBLN2
ENSSSCG00000020859
ENSG00000141668
Cerebellin-2
Tissue enriched
Detected in some
brain:
26.0
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