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Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
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Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
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Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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18358 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
C1orf210
ENSSSCG00000003951
ENSG00000253313
Chromosome 1 open reading frame 210
Tissue enhanced
Detected in many
kidney:
64.1
liver:
43.8
stomach:
40.6
C1orf216
ENSSSCG00000037600
ENSG00000142686
Chromosome 1 open reading frame 216
Tissue enhanced
Detected in many
brain:
15.0
C1orf228
ENSSSCG00000033259
ENSG00000198520
Chromosome 1 open reading frame 228
Tissue enhanced
Detected in many
epididymis:
26.3
testis:
16.2
C1orf35
ENSSSCG00000013991
ENSG00000143793
Multiple myeloma tumor-associated protein 2
Low tissue specificity
Detected in all
C1orf43
ENSSSCG00000006554
ENSG00000143612
Uncharacterized protein C1orf43 homolog
Low tissue specificity
Detected in all
C1orf53
ENSSSCG00000032380
ENSG00000203724
Chromosome 1 open reading frame 53
Low tissue specificity
Detected in all
C1orf74
ENSSSCG00000015613
ENSG00000162757
Chromosome 1 open reading frame 74
Low tissue specificity
Detected in all
C1QA
ENSSSCG00000003524
ENSG00000173372
Complement C1q subcomponent subunit A precursor
Tissue enhanced
Detected in all
lymphoid tissue:
142.8
synovial tissue:
77.9
C1QB
ENSSSCG00000033512
ENSG00000173369
Complement C1q subcomponent subunit B precursor
Tissue enhanced
Detected in many
lymphoid tissue:
125.8
synovial tissue:
91.1
C1QC
ENSSSCG00000038706
ENSG00000159189
Complement C1q subcomponent subunit C precursor
Tissue enhanced
Detected in many
lymphoid tissue:
98.3
synovial tissue:
86.3
C1QL1
ENSSSCG00000039101
ENSG00000131094
C1q-related factor precursor
Group enriched
Detected in some
brain:
32.7
pineal gland:
19.1
retina:
13.8
C1QL2
ENSSSCG00000015717
ENSG00000144119
Complement C1q like 2
Group enriched
Detected in some
brain:
12.9
pituitary gland:
3.2
retina:
10.1
C1QL3
ENSSSCG00000011043
ENSG00000165985
Complement C1q like 3
Tissue enriched
Detected in many
brain:
39.1
C1QL4
ENSSSCG00000000197
ENSG00000186897
Complement C1q like 4
Tissue enhanced
Detected in some
brain:
11.8
cervix:
22.0
endometrium:
9.0
fallopian tube:
10.5
C1QTNF1
ENSSSCG00000035511
ENSG00000173918
C1q and TNF related 1
Low tissue specificity
Detected in many
C1QTNF12
ENSSSCG00000003333
ENSG00000184163
C1q and TNF related 12
Tissue enhanced
Detected in many
skin:
22.9
C1QTNF2
ENSSSCG00000035993
ENSG00000145861
Complement C1q tumor necrosis factor-related protein 2 precursor
Low tissue specificity
Detected in all
C1QTNF4
ENSSSCG00000013231
ENSG00000172247
C1q and TNF related 4
Group enriched
Detected in many
brain:
45.2
retina:
11.9
C1QTNF6
ENSSSCG00000030325
ENSG00000133466
Complement C1q tumor necrosis factor-related protein 6 precursor
Tissue enhanced
Detected in all
dura mater:
39.8
lens:
77.4
C1QTNF7
ENSSSCG00000008737
ENSG00000163145
Complement C1q tumor necrosis factor-related protein 7 precursor
Tissue enhanced
Detected in many
cornea:
30.9
C1R
ENSSSCG00000000675
ENSG00000159403
Complement C1r
Tissue enhanced
Detected in many
liver:
178.7
C1RL
ENSSSCG00000033913
ENSG00000139178
Complement C1r subcomponent like
Tissue enhanced
Detected in all
liver:
36.8
C1S
ENSSSCG00000039847
ENSG00000182326
Complement C1s subcomponent precursor
Tissue enhanced
Detected in all
liver:
141.3
C2
ENSSSCG00000001422
ENSG00000166278
Complement C2 precursor
Tissue enhanced
Detected in many
liver:
61.2
pineal gland:
31.1
synovial tissue:
38.1
C20orf194
ENSSSCG00000007155
ENSG00000088854
Chromosome 20 open reading frame 194
Low tissue specificity
Detected in all
C20orf196
ENSSSCG00000039269
ENSG00000171984
Chromosome 20 open reading frame 196
Low tissue specificity
Detected in all
C20orf202
ENSSSCG00000007192
ENSG00000215595
Chromosome 20 open reading frame 202
Tissue enhanced
Detected in some
brain:
17.9
lens:
6.0
C20orf85
ENSSSCG00000007510
ENSG00000124237
Uncharacterized protein C20orf85 homolog
Tissue enhanced
Detected in some
fallopian tube:
103.3
lung:
54.0
upper respiratory system:
95.4
C20orf96
ENSSSCG00000007212
ENSG00000196476
Chromosome 20 open reading frame 96
Tissue enriched
Detected in many
choroid plexus:
73.9
C21orf62
ENSSSCG00000012038
ENSG00000205929
Uncharacterized protein C21orf62 homolog precursor
Tissue enriched
Detected in some
choroid plexus:
59.5
C21orf91
ENSSSCG00000033025
ENSG00000154642
Chromosome 21 open reading frame 91
Tissue enhanced
Detected in all
brain:
38.0
retina:
44.2
C22orf23
ENSSSCG00000000117
ENSG00000128346
Chromosome 22 open reading frame 23
Tissue enhanced
Detected in many
testis:
33.3
C22orf39
ENSSSCG00000040740
ENSG00000242259
Chromosome 22 open reading frame 39
Low tissue specificity
Detected in all
C2CD2
ENSSSCG00000025821
ENSG00000157617
C2 calcium dependent domain containing 2
Tissue enhanced
Detected in all
retina:
48.7
C2CD2L
ENSSSCG00000015111
ENSG00000172375
C2CD2 like
Low tissue specificity
Detected in all
C2CD3
ENSSSCG00000014835
ENSG00000168014
C2 calcium dependent domain containing 3
Low tissue specificity
Detected in all
C2CD4C
ENSSSCG00000037177
ENSG00000183186
C2 calcium dependent domain containing 4C
Tissue enriched
Detected in some
brain:
11.4
C2CD4D
ENSSSCG00000021540
ENSG00000225556
C2 calcium dependent domain containing 4D
Tissue enhanced
Detected in many
cartilage:
23.9
lymphoid tissue:
34.3
male glands:
20.4
C2CD5
ENSSSCG00000000570
ENSG00000111731
C2 calcium dependent domain containing 5
Low tissue specificity
Detected in all
C2orf15
ENSSSCG00000038761
ENSG00000273045
Chromosome 2 open reading frame 15
Low tissue specificity
Detected in all
C2orf40
ENSSSCG00000037106
ENSG00000119147
Augurin precursor
Group enriched
Detected in many
cartilage:
221.4
choroid plexus:
64.2
C2orf42
ENSSSCG00000008332
ENSG00000115998
Uncharacterized protein C2orf42 homolog
Tissue enhanced
Detected in all
testis:
39.8
C2orf49
ENSSSCG00000035390
ENSG00000135974
Chromosome 2 open reading frame 49
Low tissue specificity
Detected in all
C2orf68
ENSSSCG00000028287
ENSG00000168887
Chromosome 2 open reading frame 68
Low tissue specificity
Detected in all
C2orf69
ENSSSCG00000016086
ENSG00000178074
Chromosome 2 open reading frame 69
Low tissue specificity
Detected in all
C2orf70
ENSSSCG00000008565
ENSG00000173557
Chromosome 2 open reading frame 70
Group enriched
Detected in some
fallopian tube:
14.8
testis:
32.6
C2orf71
ENSSSCG00000024725
ENSG00000179270
Chromosome 2 open reading frame 71
Group enriched
Detected in some
choroid plexus:
47.5
retina:
35.6
C2orf72
ENSSSCG00000016270
ENSG00000204128
Chromosome 2 open reading frame 72
Tissue enhanced
Detected in many
liver:
40.7
C2orf73
ENSSSCG00000008410
ENSG00000177994
Chromosome 2 open reading frame 73
Tissue enriched
Detected in all
testis:
57.8
C2orf74
ENSSSCG00000008384
ENSG00000237651
Chromosome 2 open reading frame 74
Tissue enriched
Detected in some
testis:
65.9
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