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Keyword
Chromosome
1
2
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7
8
9
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11
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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18358 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
HOXD11
ENSSSCG00000034741
ENSG00000128713
Homeobox D11
Tissue enhanced
Detected in many
male glands:
55.2
smooth muscle:
21.6
urinary bladder:
18.8
HOXD3
ENSSSCG00000015985
ENSG00000128652
Homeobox D3
Tissue enhanced
Detected in many
epididymis:
21.2
kidney:
23.0
male glands:
57.4
HOXD4
ENSSSCG00000015984
ENSG00000170166
Homeobox D4
Tissue enhanced
Detected in many
epididymis:
59.9
kidney:
38.0
male glands:
48.8
HOXD8
ENSSSCG00000040349
ENSG00000175879
Homeobox D8
Tissue enhanced
Detected in many
adrenal gland:
26.3
cartilage:
24.8
epididymis:
42.1
HOXD9
ENSSSCG00000015982
ENSG00000128709
Homeobox D9
Tissue enhanced
Detected in many
cartilage:
40.7
epididymis:
30.9
kidney:
34.1
male glands:
31.3
HP1BP3
ENSSSCG00000003511
ENSG00000127483
Heterochromatin protein 1 binding protein 3
Low tissue specificity
Detected in all
HPCA
ENSSSCG00000032664
ENSG00000121905
Neuron-specific calcium-binding protein hippocalcin
Tissue enriched
Detected in some
brain:
171.1
HPCAL1
ENSSSCG00000003663
ENSG00000115756
Hippocalcin-like protein 1
Tissue enhanced
Detected in all
brain:
70.4
HPCAL4
ENSSSCG00000023460
ENSG00000116983
Hippocalcin-like protein 4
Tissue enriched
Detected in some
brain:
65.9
HPDL
ENSSSCG00000003920
ENSG00000186603
4-hydroxyphenylpyruvate dioxygenase like
Tissue enriched
Detected in single
brain:
6.7
HPF1
ENSSSCG00000009711
ENSG00000056050
Histone PARylation factor 1
Low tissue specificity
Detected in all
HPGD
ENSSSCG00000009699
ENSG00000164120
15-hydroxyprostaglandin dehydrogenase
Low tissue specificity
Detected in all
HPGDS
ENSSSCG00000009194
ENSG00000163106
Hematopoietic prostaglandin D synthase
Tissue enhanced
Detected in many
lymphoid tissue:
17.0
skin:
15.4
HPN
ENSSSCG00000021867
ENSG00000105707
Hepsin
Group enriched
Detected in all
kidney:
43.4
liver:
93.6
male glands:
36.2
HPS1
ENSSSCG00000010534
ENSG00000107521
Hermansky-Pudlak syndrome 1 protein
Low tissue specificity
Detected in all
HPS3
ENSSSCG00000011699
ENSG00000163755
Hermansky-Pudlak syndrome 3 protein
Low tissue specificity
Detected in all
HPS4
ENSSSCG00000009960
ENSG00000100099
Hermansky-Pudlak syndrome 4 protein
Low tissue specificity
Detected in all
HPSE
ENSSSCG00000009237
ENSG00000173083
Heparanase precursor
Tissue enhanced
Detected in all
lymphoid tissue:
34.9
HPX
ENSSSCG00000014626
ENSG00000110169
Hemopexin precursor
Tissue enriched
Detected in some
liver:
339.3
HR
ENSSSCG00000009616
ENSG00000168453
Lysine-specific demethylase hairless
Tissue enhanced
Detected in many
mouth:
21.3
skin:
49.7
HRAS
ENSSSCG00000031513
ENSG00000174775
HRas proto-oncogene, GTPase
Tissue enhanced
Detected in all
lens:
85.8
HRASLS
ENSSSCG00000036094
ENSG00000127252
HRAS like suppressor
Low tissue specificity
Detected in all
HRASLS5
ENSSSCG00000021482
ENSG00000168004
HRAS like suppressor family member 5
Tissue enriched
Detected in many
testis:
64.4
HRCT1
ENSSSCG00000035720
ENSG00000196196
Histidine rich carboxyl terminus 1
Tissue enhanced
Detected in many
penis:
46.2
HRH1
ENSSSCG00000011576
ENSG00000196639
Histamine receptor H1
Low tissue specificity
Detected in all
HRH2
ENSSSCG00000029096
ENSG00000113749
Histamine receptor H2
Low tissue specificity
Detected in all
HRH3
ENSSSCG00000038578
ENSG00000101180
Histamine receptor H3
Tissue enriched
Detected in some
brain:
24.0
HRH4
ENSSSCG00000003714
ENSG00000134489
Histamine H4 receptor
Low tissue specificity
Detected in many
HRK
ENSSSCG00000033216
ENSG00000135116
Harakiri, BCL2 interacting protein
Tissue enriched
Detected in many
cervix:
26.7
HS1BP3
ENSSSCG00000030115
ENSG00000118960
HCLS1 binding protein 3
Low tissue specificity
Detected in all
HS3ST1
ENSSSCG00000021515
ENSG00000002587
Heparan sulfate-glucosamine 3-sulfotransferase 1
Tissue enhanced
Detected in many
cartilage:
54.1
epididymis:
32.4
HS3ST2
ENSSSCG00000036475
ENSG00000122254
Heparan sulfate-glucosamine 3-sulfotransferase 2
Low tissue specificity
Detected in all
HS3ST4
ENSSSCG00000039406
ENSG00000182601
Heparan sulfate-glucosamine 3-sulfotransferase 4
Tissue enriched
Detected in some
brain:
17.4
HS3ST5
ENSSSCG00000004433
ENSG00000249853
Heparan sulfate-glucosamine 3-sulfotransferase 5
Tissue enhanced
Detected in many
adrenal gland:
11.0
brain:
21.2
ductus deferens:
14.5
kidney:
13.4
HS3ST6
ENSSSCG00000031216
ENSG00000162040
Heparan sulfate-glucosamine 3-sulfotransferase 6
Tissue enhanced
Detected in all
adipose tissue:
38.5
HS6ST1
ENSSSCG00000022197
ENSG00000136720
Heparan sulfate 6-O-sulfotransferase 1
Low tissue specificity
Detected in all
HS6ST3
ENSSSCG00000009504
ENSG00000185352
Heparan sulfate 6-O-sulfotransferase 3
Tissue enhanced
Detected in many
brain:
30.3
thyroid gland:
11.0
HSBP1
ENSSSCG00000031892
Heat shock factor-binding protein 1
Low tissue specificity
Detected in all
HSBP1L1
ENSSSCG00000005778
ENSG00000226742
Heat shock factor-binding protein 1-like protein 1
Tissue enhanced
Detected in many
pineal gland:
15.3
smooth muscle:
15.4
HSCB
ENSSSCG00000034860
ENSG00000100209
HscB mitochondrial iron-sulfur cluster cochaperone
Low tissue specificity
Detected in all
HSD11B1
ENSSSCG00000015616
ENSG00000117594
Hydroxysteroid 11-beta dehydrogenase 1
Tissue enhanced
Detected in all
lens:
85.8
liver:
92.3
HSD11B1L
ENSSSCG00000030546
ENSG00000167733
Hydroxysteroid 11-beta dehydrogenase 1 like
Tissue enhanced
Detected in all
lens:
85.2
HSD17B10
ENSSSCG00000012327
ENSG00000072506
Hydroxysteroid 17-beta dehydrogenase 10
Tissue enhanced
Detected in all
liver:
114.6
HSD17B12
ENSSSCG00000021739
ENSG00000149084
Hydroxysteroid 17-beta dehydrogenase 12
Low tissue specificity
Detected in all
HSD17B13
ENSSSCG00000009225
ENSG00000170509
17-beta-hydroxysteroid dehydrogenase 13
Tissue enhanced
Detected in all
liver:
137.5
salivary gland:
76.8
HSD17B14
ENSSSCG00000003138
ENSG00000087076
Hydroxysteroid 17-beta dehydrogenase 14
Tissue enhanced
Detected in all
kidney:
90.5
liver:
62.6
HSD17B4
ENSSSCG00000028431
ENSG00000133835
Peroxisomal multifunctional enzyme type 2
Tissue enhanced
Detected in all
liver:
83.5
testis:
71.4
HSD17B6
ENSSSCG00000027854
ENSG00000025423
Hydroxysteroid 17-beta dehydrogenase 6
Group enriched
Detected in some
brain:
22.5
liver:
82.6
male glands:
22.4
HSD17B7
ENSSSCG00000006337
ENSG00000132196
3-keto-steroid reductase
Tissue enhanced
Detected in all
liver:
28.5
HSD17B8
ENSSSCG00000001476
ENSG00000204228
Estradiol 17-beta-dehydrogenase 8
Low tissue specificity
Detected in all
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