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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Biological process
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15211 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PLD1
ENSSSCG00000011750
ENSG00000075651
Phospholipase D1
Low tissue specificity
Detected in many
PLD2
ENSSSCG00000017912
ENSG00000129219
Phospholipase D2
Low tissue specificity
Detected in all
PLD3
ENSSSCG00000025109
ENSG00000105223
Phospholipase D3
Tissue enhanced
Detected in all
brain:
83.4
pituitary gland:
95.2
PLD4
ENSSSCG00000002554
ENSG00000166428
Phospholipase D family member 4
Tissue enhanced
Detected in many
lymphoid tissue:
30.6
synovial tissue:
41.7
PLEC
ENSSSCG00000039094
ENSG00000178209
Plectin
Low tissue specificity
Detected in all
PLEK
ENSSSCG00000008348
ENSG00000115956
Pleckstrin
Tissue enhanced
Detected in many
lung:
13.0
lymphoid tissue:
19.5
PLEKHA1
ENSSSCG00000010702
ENSG00000107679
Pleckstrin homology domain containing A1
Low tissue specificity
Detected in all
PLEKHA2
ENSSSCG00000033367
ENSG00000169499
Pleckstrin homology domain containing A2
Tissue enhanced
Detected in all
lens:
59.0
PLEKHA3
ENSSSCG00000016000
ENSG00000116095
Pleckstrin homology domain-containing family A member 3
Low tissue specificity
Detected in all
PLEKHA4
ENSSSCG00000003137
ENSG00000105559
Pleckstrin homology domain containing A4
Tissue enriched
Detected in many
vagus nerve:
103.3
PLEKHA5
ENSSSCG00000000588
ENSG00000052126
Pleckstrin homology domain containing A5
Low tissue specificity
Detected in all
PLEKHA6
ENSSSCG00000015281
ENSG00000143850
Pleckstrin homology domain containing A6
Tissue enhanced
Detected in many
stomach:
67.2
PLEKHA7
ENSSSCG00000013382
ENSG00000166689
Pleckstrin homology domain containing A7
Low tissue specificity
Detected in many
PLEKHA8
ENSSSCG00000016682
ENSG00000106086
Pleckstrin homology domain containing A8
Low tissue specificity
Detected in all
PLEKHD1
ENSSSCG00000002309
ENSG00000175985
Pleckstrin homology domain-containing family D member 1
Low tissue specificity
Detected in all
PLEKHF1
ENSSSCG00000002852
ENSG00000166289
Pleckstrin homology and FYVE domain containing 1
Low tissue specificity
Detected in many
PLEKHF2
ENSSSCG00000039549
ENSG00000175895
Pleckstrin homology and FYVE domain containing 2
Tissue enhanced
Detected in all
retina:
33.4
PLEKHG1
ENSSSCG00000032778
ENSG00000120278
Pleckstrin homology and RhoGEF domain containing G1
Tissue enhanced
Detected in all
epididymis:
44.9
PLEKHG2
ENSSSCG00000030048
ENSG00000090924
Pleckstrin homology and RhoGEF domain containing G2
Tissue enhanced
Detected in many
vagus nerve:
42.8
PLEKHG3
ENSSSCG00000002276
ENSG00000126822
Pleckstrin homology and RhoGEF domain containing G3
Low tissue specificity
Detected in all
PLEKHG4
ENSSSCG00000002782
ENSG00000196155
Pleckstrin homology and RhoGEF domain containing G4
Tissue enhanced
Detected in some
mouth:
3.8
ovary:
3.2
testis:
11.1
PLEKHG5
ENSSSCG00000003376
ENSG00000171680
Pleckstrin homology and RhoGEF domain containing G5
Tissue enhanced
Detected in all
vagus nerve:
45.9
PLEKHH2
ENSSSCG00000008456
ENSG00000152527
Pleckstrin homology, MyTH4 and FERM domain containing H2
Low tissue specificity
Detected in all
PLEKHH3
ENSSSCG00000017391
ENSG00000068137
Pleckstrin homology, MyTH4 and FERM domain containing H3
Low tissue specificity
Detected in all
PLEKHM1
ENSSSCG00000017325
ENSG00000225190
Pleckstrin homology and RUN domain containing M1
Low tissue specificity
Detected in all
PLEKHM2
ENSSSCG00000003468
ENSG00000116786
Pleckstrin homology and RUN domain containing M2
Low tissue specificity
Detected in all
PLEKHM3
ENSSSCG00000016141
ENSG00000178385
Pleckstrin homology domain containing M3
Tissue enhanced
Detected in all
lens:
56.5
PLEKHO1
ENSSSCG00000022784
ENSG00000023902
Pleckstrin homology domain containing O1
Low tissue specificity
Detected in all
PLEKHS1
ENSSSCG00000034754
ENSG00000148735
Pleckstrin homology domain containing S1
Low tissue specificity
Detected in all
PLGRKT
ENSSSCG00000005212
ENSG00000107020
Plasminogen receptor (KT)
Low tissue specificity
Detected in all
PLIN1
ENSSSCG00000001844
ENSG00000166819
Perilipin-1
Group enriched
Detected in many
adipose tissue:
207.5
aorta:
81.3
bone marrow:
108.1
PLIN2
ENSSSCG00000035863
ENSG00000147872
Perilipin-2
Low tissue specificity
Detected in all
PLIN3
ENSSSCG00000038954
ENSG00000105355
Perilipin-3
Tissue enriched
Detected in all
lens:
114.2
PLIN4
ENSSSCG00000013512
ENSG00000167676
Perilipin 4
Tissue enhanced
Detected in many
adipose tissue:
121.5
aorta:
63.1
bone marrow:
45.7
PLIN5
ENSSSCG00000013513
ENSG00000214456
Perilipin-5
Tissue enhanced
Detected in many
choroid plexus:
52.8
liver:
14.5
skeletal muscle:
14.9
PLK1
ENSSSCG00000026748
ENSG00000166851
Polo like kinase 1
Tissue enhanced
Detected in many
stomach:
42.9
testis:
73.2
PLK2
ENSSSCG00000016925
ENSG00000145632
Polo like kinase 2
Tissue enhanced
Detected in many
bone marrow:
52.6
PLK3
ENSSSCG00000003928
ENSG00000173846
Polo like kinase 3
Low tissue specificity
Detected in many
PLLP
ENSSSCG00000002818
ENSG00000102934
Plasmolipin
Group enriched
Detected in many
brain:
142.4
stomach:
38.7
vagus nerve:
61.9
PLN
ENSSSCG00000034163
ENSG00000198523
Cardiac phospholamban
Tissue enhanced
Detected in many
heart:
807.9
skeletal muscle:
233.5
PLOD1
ENSSSCG00000003433
ENSG00000083444
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1
Tissue enhanced
Detected in all
cornea:
54.7
ovary:
65.1
PLOD2
ENSSSCG00000011689
ENSG00000152952
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2
Tissue enhanced
Detected in many
cartilage:
73.6
PLOD3
ENSSSCG00000028879
ENSG00000106397
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3
Low tissue specificity
Detected in all
PLP2
ENSSSCG00000012294
ENSG00000102007
Proteolipid protein 2
Low tissue specificity
Detected in all
PLPP1
ENSSSCG00000016912
ENSG00000067113
Phospholipid phosphatase 1
Low tissue specificity
Detected in all
PLPP5
ENSSSCG00000015819
ENSG00000147535
Phospholipid phosphatase 5
Tissue enhanced
Detected in all
male glands:
44.7
PLPP6
ENSSSCG00000005220
ENSG00000205808
Phospholipid phosphatase 6
Tissue enhanced
Detected in all
male glands:
31.2
PLPP7
ENSSSCG00000005713
ENSG00000160539
Phospholipid phosphatase 7 (inactive)
Tissue enhanced
Detected in many
skeletal muscle:
58.0
PLPPR2
ENSSSCG00000013620
ENSG00000105520
Phospholipid phosphatase related 2
Tissue enriched
Detected in all
brain:
43.1
PLPPR3
ENSSSCG00000037432
ENSG00000129951
Phospholipid phosphatase related 3
Low tissue specificity
Detected in many
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