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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
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7
8
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15211 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PDE1B
ENSSSCG00000000297
ENSG00000123360
Phosphodiesterase 1B
Tissue enriched
Detected in many
brain:
80.9
PDE1C
ENSSSCG00000016668
ENSG00000154678
Phosphodiesterase 1C
Tissue enhanced
Detected in many
brain:
29.8
pineal gland:
34.2
PDE2A
ENSSSCG00000029388
ENSG00000186642
Phosphodiesterase 2A
Tissue enhanced
Detected in many
brain:
54.7
PDE3A
ENSSSCG00000028662
ENSG00000172572
CGMP-inhibited 3',5'-cyclic phosphodiesterase A
Tissue enhanced
Detected in many
heart:
78.3
PDE3B
ENSSSCG00000013388
ENSG00000152270
Phosphodiesterase 3B
Tissue enhanced
Detected in all
lens:
44.1
PDE4A
ENSSSCG00000013642
ENSG00000065989
CAMP-specific 3',5'-cyclic phosphodiesterase 4A
Tissue enhanced
Detected in many
male glands:
60.9
skeletal muscle:
47.4
PDE4B
ENSSSCG00000003805
ENSG00000184588
CAMP-specific 3',5'-cyclic phosphodiesterase 4B isoform 2
Low tissue specificity
Detected in many
PDE4D
ENSSSCG00000016929
ENSG00000113448
Phosphodiesterase 4D
Tissue enhanced
Detected in many
cartilage:
53.8
PDE5A
ENSSSCG00000009106
ENSG00000138735
Phosphodiesterase 5A
Tissue enhanced
Detected in many
smooth muscle:
69.7
PDE6D
ENSSSCG00000016279
ENSG00000156973
Phosphodiesterase 6D
Low tissue specificity
Detected in all
PDE7A
ENSSSCG00000006218
ENSG00000205268
Phosphodiesterase 7A
Tissue enhanced
Detected in all
cartilage:
51.4
PDE7B
ENSSSCG00000004165
ENSG00000171408
Phosphodiesterase 7B
Low tissue specificity
Detected in all
PDE9A
ENSSSCG00000030016
ENSG00000160191
Phosphodiesterase 9A
Low tissue specificity
Detected in all
PDGFA
ENSSSCG00000007541
ENSG00000197461
Platelet derived growth factor subunit A
Low tissue specificity
Detected in all
PDGFB
ENSSSCG00000033327
ENSG00000100311
Platelet derived growth factor subunit B
Low tissue specificity
Detected in many
PDGFC
ENSSSCG00000024960
ENSG00000145431
Platelet derived growth factor C
Low tissue specificity
Detected in many
PDGFD
ENSSSCG00000014994
ENSG00000170962
Platelet derived growth factor D
Low tissue specificity
Detected in all
PDGFRA
ENSSSCG00000008841
ENSG00000134853
Platelet-derived growth factor receptor alpha precursor
Tissue enhanced
Detected in all
cartilage:
67.5
ovary:
55.7
PDGFRB
ENSSSCG00000022741
ENSG00000113721
Platelet derived growth factor receptor beta
Low tissue specificity
Detected in many
PDGFRL
ENSSSCG00000006988
ENSG00000104213
Platelet derived growth factor receptor like
Tissue enhanced
Detected in many
cornea:
98.9
PDHB
ENSSSCG00000025881
ENSG00000168291
Pyruvate dehydrogenase E1 component subunit beta, mitochondrial
Low tissue specificity
Detected in all
PDHX
ENSSSCG00000013298
ENSG00000110435
Pyruvate dehydrogenase complex component X
Low tissue specificity
Detected in all
PDIA3
ENSSSCG00000004700
ENSG00000167004
Protein disulfide-isomerase A3 precursor
Low tissue specificity
Detected in all
PDIA4
ENSSSCG00000015453
ENSG00000155660
Protein disulfide-isomerase A4 precursor
Low tissue specificity
Detected in all
PDIA5
ENSSSCG00000011870
ENSG00000065485
Protein disulfide isomerase family A member 5
Low tissue specificity
Detected in all
PDIA6
ENSSSCG00000008633
ENSG00000143870
Protein disulfide-isomerase A6 precursor
Low tissue specificity
Detected in all
PDIK1L
ENSSSCG00000030660
ENSG00000175087
PDLIM1 interacting kinase 1 like
Low tissue specificity
Detected in all
PDILT
ENSSSCG00000007860
ENSG00000169340
Protein disulfide isomerase like, testis expressed
Tissue enriched
Detected in many
testis:
58.5
PDK2
ENSSSCG00000027198
ENSG00000005882
Pyruvate dehydrogenase kinase 2
Low tissue specificity
Detected in all
PDK3
ENSSSCG00000012181
ENSG00000067992
Pyruvate dehydrogenase kinase 3
Low tissue specificity
Detected in all
PDK4
ENSSSCG00000015334
ENSG00000004799
Pyruvate dehydrogenase kinase, isozyme 4
Tissue enhanced
Detected in many
choroid plexus:
112.5
skeletal muscle:
87.4
PDLIM1
ENSSSCG00000010493
ENSG00000107438
PDZ and LIM domain protein 1
Low tissue specificity
Detected in many
PDLIM4
ENSSSCG00000014274
ENSG00000131435
PDZ and LIM domain protein 4
Low tissue specificity
Detected in all
PDLIM5
ENSSSCG00000009192
ENSG00000163110
PDZ and LIM domain 5
Tissue enhanced
Detected in all
heart:
132.1
skeletal muscle:
126.5
PDLIM7
ENSSSCG00000040507
ENSG00000196923
PDZ and LIM domain 7
Tissue enhanced
Detected in all
skeletal muscle:
228.4
smooth muscle:
135.2
PDP1
ENSSSCG00000006107
ENSG00000164951
Pyruvate dehyrogenase phosphatase catalytic subunit 1
Tissue enhanced
Detected in all
brain:
54.0
PDP2
ENSSSCG00000036067
ENSG00000172840
Pyruvate dehyrogenase phosphatase catalytic subunit 2
Low tissue specificity
Detected in all
PDPK1
ENSSSCG00000037719
ENSG00000140992
3-phosphoinositide dependent protein kinase 1
Low tissue specificity
Detected in all
PDPR
ENSSSCG00000002724
ENSG00000090857
Pyruvate dehydrogenase phosphatase regulatory subunit
Low tissue specificity
Detected in all
PDRG1
ENSSSCG00000007237
ENSG00000088356
P53 and DNA damage regulated 1
Low tissue specificity
Detected in all
PDS5A
ENSSSCG00000023112
ENSG00000121892
PDS5 cohesin associated factor A
Low tissue specificity
Detected in all
PDS5B
ENSSSCG00000009345
ENSG00000083642
PDS5 cohesin associated factor B
Low tissue specificity
Detected in all
PDSS1
ENSSSCG00000011061
ENSG00000148459
Decaprenyl diphosphate synthase subunit 1
Tissue enhanced
Detected in all
large intestine:
32.3
PDSS2
ENSSSCG00000036168
ENSG00000164494
Decaprenyl-diphosphate synthase subunit 2
Low tissue specificity
Detected in all
PDXDC1
ENSSSCG00000039119
ENSG00000179889
Pyridoxal dependent decarboxylase domain containing 1
Tissue enhanced
Detected in all
male glands:
101.4
PDXK
ENSSSCG00000034758
ENSG00000160209
Pyridoxal kinase
Tissue enhanced
Detected in all
brain:
25.4
PDXP
ENSSSCG00000034632
ENSG00000241360
Pyridoxal phosphatase
Tissue enhanced
Detected in many
brain:
33.1
PDZD11
ENSSSCG00000012378
ENSG00000120509
PDZ domain-containing protein 11
Low tissue specificity
Detected in all
PDZD2
ENSSSCG00000016810
ENSG00000133401
PDZ domain containing 2
Low tissue specificity
Detected in all
PDZD3
ENSSSCG00000027710
ENSG00000172367
PDZ domain containing 3
Tissue enhanced
Detected in all
kidney:
41.1
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