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Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15211 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
NOS2
ENSSSCG00000017755
ENSG00000007171
Nitric oxide synthase, inducible
Tissue enhanced
Detected in many
cartilage:
34.7
large intestine:
42.1
NOS3
ENSSSCG00000016450
ENSG00000164867
Nitric oxide synthase, endothelial
Tissue enhanced
Detected in many
penis:
48.6
NOSIP
ENSSSCG00000029154
ENSG00000142546
Nitric oxide synthase interacting protein
Low tissue specificity
Detected in all
NOSTRIN
ENSSSCG00000015923
ENSG00000163072
Nitric oxide synthase trafficking
Low tissue specificity
Detected in many
NOTCH1
ENSSSCG00000038509
ENSG00000148400
Notch 1
Low tissue specificity
Detected in all
NOTCH2
ENSSSCG00000006709
ENSG00000134250
Notch 2
Low tissue specificity
Detected in all
NOTCH3
ENSSSCG00000025176
ENSG00000074181
Notch 3
Low tissue specificity
Detected in all
NOTCH4
ENSSSCG00000001440
ENSG00000204301
Neurogenic locus notch homolog protein 4 precursor
Low tissue specificity
Detected in many
NOV
ENSSSCG00000006002
ENSG00000136999
Nephroblastoma overexpressed
Tissue enhanced
Detected in many
dura mater:
78.5
penis:
103.9
NOVA1
ENSSSCG00000024396
ENSG00000139910
NOVA alternative splicing regulator 1
Tissue enhanced
Detected in many
brain:
35.0
synovial tissue:
21.8
NOVA2
ENSSSCG00000035029
ENSG00000104967
NOVA alternative splicing regulator 2
Tissue enhanced
Detected in many
brain:
25.8
NOX4
ENSSSCG00000014927
ENSG00000086991
NADPH oxidase 4
Tissue enhanced
Detected in many
kidney:
56.0
lens:
24.9
NOX5
ENSSSCG00000004966
ENSG00000255346
NADPH oxidase 5
Tissue enhanced
Detected in many
mesothelial tissue:
18.5
urinary bladder:
24.4
NOXO1
ENSSSCG00000008034
ENSG00000196408
NADPH oxidase organizer 1
Tissue enhanced
Detected in some
gallbladder:
11.3
large intestine:
21.9
stomach:
33.0
NOXRED1
ENSSSCG00000030069
ENSG00000165555
NADP dependent oxidoreductase domain containing 1
Tissue enhanced
Detected in many
testis:
15.9
NPAS2
ENSSSCG00000008171
ENSG00000170485
Neuronal PAS domain protein 2
Low tissue specificity
Detected in all
NPAS3
ENSSSCG00000001964
ENSG00000151322
Neuronal PAS domain protein 3
Tissue enhanced
Detected in many
brain:
18.5
cartilage:
25.9
NPAS4
ENSSSCG00000012942
ENSG00000174576
Neuronal PAS domain protein 4
Tissue enhanced
Detected in all
adrenal gland:
21.3
NPAT
ENSSSCG00000026959
ENSG00000149308
Nuclear protein, coactivator of histone transcription
Low tissue specificity
Detected in all
NPC1
ENSSSCG00000003707
ENSG00000141458
Niemann-Pick C1 protein precursor
Tissue enhanced
Detected in all
adrenal gland:
51.1
brain:
53.2
NPC1L1
ENSSSCG00000016746
ENSG00000015520
NPC1 like intracellular cholesterol transporter 1
Group enriched
Detected in all
gallbladder:
10.5
liver:
28.8
small intestine:
35.8
NPC2
ENSSSCG00000002366
ENSG00000119655
Epididymal secretory protein E1
Tissue enriched
Detected in many
epididymis:
615.2
NPDC1
ENSSSCG00000034566
ENSG00000107281
Neural proliferation, differentiation and control 1
Low tissue specificity
Detected in many
NPEPL1
ENSSSCG00000007517
ENSG00000215440
Probable aminopeptidase NPEPL1
Low tissue specificity
Detected in many
NPEPPS
ENSSSCG00000017513
ENSG00000141279
Aminopeptidase puromycin sensitive
Low tissue specificity
Detected in all
NPFF
ENSSSCG00000000277
ENSG00000139574
Neuropeptide FF-amide peptide precursor
Tissue enhanced
Detected in all
brain:
56.3
NPG3
ENSSSCG00000011349
Protegrin-3
Group enriched
Detected in some
bone marrow:
184.7
dura mater:
123.3
NPHP1
ENSSSCG00000008111
ENSG00000144061
Nephrocystin 1
Tissue enhanced
Detected in all
testis:
55.1
NPHP4
ENSSSCG00000029843
ENSG00000131697
Nephrocystin 4
Low tissue specificity
Detected in all
NPL
ENSSSCG00000022292
ENSG00000135838
N-acetylneuraminate lyase
Tissue enhanced
Detected in many
lymphoid tissue:
26.3
skin:
27.8
NPLOC4
ENSSSCG00000024235
ENSG00000182446
NPL4 homolog, ubiquitin recognition factor
Low tissue specificity
Detected in all
NPM1
ENSSSCG00000016998
ENSG00000181163
Nucleophosmin 1
Low tissue specificity
Detected in all
NPM3
ENSSSCG00000010568
ENSG00000107833
Nucleophosmin/nucleoplasmin 3
Low tissue specificity
Detected in all
NPNT
ENSSSCG00000038801
ENSG00000168743
Nephronectin
Tissue enhanced
Detected in many
cornea:
52.6
thyroid gland:
41.8
NPPA
ENSSSCG00000003430
ENSG00000175206
Natriuretic peptides A precursor
Tissue enriched
Detected in some
heart:
932.9
NPR1
ENSSSCG00000006572
ENSG00000169418
Natriuretic peptide receptor 1
Tissue enhanced
Detected in many
adipose tissue:
45.7
aorta:
28.4
mesothelial tissue:
26.9
NPR2
ENSSSCG00000005322
ENSG00000159899
Atrial natriuretic peptide receptor 2 precursor
Low tissue specificity
Detected in all
NPR3
ENSSSCG00000036201
ENSG00000113389
Natriuretic peptide receptor 3
Tissue enhanced
Detected in many
choroid plexus:
21.9
cornea:
33.2
lens:
39.8
NPRL2
ENSSSCG00000011409
ENSG00000114388
NPR2 like, GATOR1 complex subunit
Low tissue specificity
Detected in all
NPRL3
ENSSSCG00000007981
ENSG00000103148
NPR3 like, GATOR1 complex subunit
Low tissue specificity
Detected in all
NPSR1
ENSSSCG00000016664
ENSG00000187258
Neuropeptide S receptor 1
Low tissue specificity
Detected in many
NPTN
ENSSSCG00000001918
ENSG00000156642
Neuroplastin
Low tissue specificity
Detected in all
NPY1R
ENSSSCG00000008888
ENSG00000164128
Neuropeptide Y receptor type 1
Tissue enhanced
Detected in all
choroid plexus:
27.1
ovary:
53.5
NPY2R
ENSSSCG00000008993
ENSG00000185149
Neuropeptide Y receptor type 2
Tissue enhanced
Detected in many
brain:
15.1
cervix:
37.5
NQO1
ENSSSCG00000002754
ENSG00000181019
NAD(P)H dehydrogenase
Tissue enhanced
Detected in many
cornea:
151.7
lens:
43.5
NQO2
ENSSSCG00000020758
ENSG00000124588
N-ribosyldihydronicotinamide:quinone reductase 2
Low tissue specificity
Detected in all
NR0B2
ENSSSCG00000003565
ENSG00000131910
Nuclear receptor subfamily 0 group B member 2
Tissue enhanced
Detected in many
adrenal gland:
18.5
liver:
25.7
NR1D1
ENSSSCG00000036933
ENSG00000126368
Nuclear receptor subfamily 1 group D member 1
Low tissue specificity
Detected in all
NR1D2
ENSSSCG00000027017
ENSG00000174738
Nuclear receptor subfamily 1 group D member 2
Low tissue specificity
Detected in all
NR1H2
ENSSSCG00000003211
ENSG00000131408
Nuclear receptor subfamily 1 group H member 2
Low tissue specificity
Detected in all
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