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UMAP gene cluster
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Keyword
Chromosome
1
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8
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15211 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
BAZ2A
ENSSSCG00000000403
ENSG00000076108
Bromodomain adjacent to zinc finger domain 2A
Low tissue specificity
Detected in all
BAZ2B
ENSSSCG00000015882
ENSG00000123636
Bromodomain adjacent to zinc finger domain 2B
Low tissue specificity
Detected in all
BBS10
ENSSSCG00000000523
ENSG00000179941
Bardet-Biedl syndrome 10
Low tissue specificity
Detected in all
BBS12
ENSSSCG00000026290
ENSG00000181004
Bardet-Biedl syndrome 12
Low tissue specificity
Detected in all
BBS2
ENSSSCG00000025417
ENSG00000125124
Bardet-Biedl syndrome 2
Low tissue specificity
Detected in all
BBS4
ENSSSCG00000001924
ENSG00000140463
Bardet-Biedl syndrome 4 protein
Low tissue specificity
Detected in all
BBS5
ENSSSCG00000015931
ENSG00000163093
Bardet-Biedl syndrome 5
Low tissue specificity
Detected in many
BBS7
ENSSSCG00000009093
ENSG00000138686
Bardet-Biedl syndrome 7
Low tissue specificity
Detected in all
BBS9
ENSSSCG00000024754
ENSG00000122507
Bardet-Biedl syndrome 9
Tissue enhanced
Detected in all
fallopian tube:
47.6
BBX
ENSSSCG00000011943
ENSG00000114439
BBX, HMG-box containing
Low tissue specificity
Detected in all
BCAM
ENSSSCG00000020657
ENSG00000187244
Basal cell adhesion molecule (Lutheran blood group)
Tissue enhanced
Detected in all
adipose tissue:
141.6
aorta:
88.3
BCAP29
ENSSSCG00000022869
ENSG00000075790
B cell receptor associated protein 29
Tissue enhanced
Detected in all
testis:
90.1
BCAP31
ENSSSCG00000012772
ENSG00000185825
B cell receptor associated protein 31
Low tissue specificity
Detected in all
BCAR1
ENSSSCG00000028878
ENSG00000050820
BCAR1, Cas family scaffolding protein
Tissue enhanced
Detected in all
kidney:
80.1
BCAR3
ENSSSCG00000006893
ENSG00000137936
BCAR3, NSP family adaptor protein
Low tissue specificity
Detected in all
BCAS2
ENSSSCG00000006756
ENSG00000116752
Pre-mRNA-splicing factor SPF27
Low tissue specificity
Detected in all
BCAS3
ENSSSCG00000017676
ENSG00000141376
BCAS3, microtubule associated cell migration factor
Low tissue specificity
Detected in all
BCAS4
ENSSSCG00000007472
ENSG00000124243
Breast carcinoma-amplified sequence 4
Tissue enhanced
Detected in many
lens:
38.4
pineal gland:
27.0
BCAT1
ENSSSCG00000029163
ENSG00000060982
Branched chain amino acid transaminase 1
Tissue enhanced
Detected in many
choroid plexus:
91.8
BCAT2
ENSSSCG00000003139
ENSG00000105552
Branched chain amino acid transaminase 2
Tissue enhanced
Detected in all
adrenal gland:
92.0
BCCIP
ENSSSCG00000010743
ENSG00000107949
BRCA2 and CDKN1A interacting protein
Tissue enhanced
Detected in all
lens:
95.3
BCDIN3D
ENSSSCG00000040144
ENSG00000186666
BCDIN3 domain containing RNA methyltransferase
Low tissue specificity
Detected in all
BCKDHB
ENSSSCG00000004465
ENSG00000083123
2-oxoisovalerate dehydrogenase subunit beta, mitochondrial
Tissue enhanced
Detected in all
testis:
70.0
BCKDK
ENSSSCG00000007763
ENSG00000103507
Branched chain ketoacid dehydrogenase kinase
Low tissue specificity
Detected in all
BCL10
ENSSSCG00000025691
ENSG00000142867
B-cell lymphoma/leukemia 10
Low tissue specificity
Detected in all
BCL11A
ENSSSCG00000008392
ENSG00000119866
B-cell lymphoma/leukemia 11A
Tissue enhanced
Detected in many
brain:
38.0
lymphoid tissue:
26.5
BCL11B
ENSSSCG00000002507
ENSG00000127152
B-cell lymphoma/leukemia 11B
Tissue enriched
Detected in many
lymphoid tissue:
85.3
BCL2A1
ENSSSCG00000040010
ENSG00000140379
Bcl-2-related protein A1
Low tissue specificity
Detected in all
BCL2L1
ENSSSCG00000035357
ENSG00000171552
Bcl-2-like protein 1
Low tissue specificity
Detected in all
BCL2L11
ENSSSCG00000022322
ENSG00000153094
Bcl-2-like protein 11 isoform 1
Low tissue specificity
Detected in all
BCL2L12
ENSSSCG00000003177
ENSG00000126453
BCL2 like 12
Low tissue specificity
Detected in all
BCL2L13
ENSSSCG00000040373
ENSG00000099968
BCL2 like 13
Tissue enhanced
Detected in all
lens:
75.6
BCL2L14
ENSSSCG00000000623
ENSG00000121380
Apoptosis facilitator Bcl-2-like protein 14
Tissue enhanced
Detected in all
testis:
21.1
BCL2L15
ENSSSCG00000038970
ENSG00000188761
BCL2 like 15
Group enriched
Detected in many
large intestine:
24.0
lung:
8.5
small intestine:
17.5
stomach:
13.3
BCL3
ENSSSCG00000027426
ENSG00000069399
B-cell lymphoma 3 protein
Tissue enhanced
Detected in many
mesothelial tissue:
52.6
BCL6
ENSSSCG00000011810
ENSG00000113916
B-cell lymphoma 6 protein
Low tissue specificity
Detected in all
BCL6B
ENSSSCG00000017927
ENSG00000161940
B cell CLL/lymphoma 6B
Tissue enhanced
Detected in many
mesothelial tissue:
30.0
BCL7A
ENSSSCG00000009801
ENSG00000110987
BCL tumor suppressor 7A
Low tissue specificity
Detected in all
BCL7B
ENSSSCG00000007708
ENSG00000106635
BCL tumor suppressor 7B
Low tissue specificity
Detected in all
BCL7C
ENSSSCG00000007776
ENSG00000099385
BCL tumor suppressor 7C
Low tissue specificity
Detected in all
BCL9
ENSSSCG00000006698
ENSG00000116128
B cell CLL/lymphoma 9
Low tissue specificity
Detected in all
BCL9L
ENSSSCG00000015099
ENSG00000186174
B cell CLL/lymphoma 9 like
Low tissue specificity
Detected in all
BCLAF1
ENSSSCG00000004163
ENSG00000029363
Bcl-2-associated transcription factor 1
Low tissue specificity
Detected in all
BCLAF3
ENSSSCG00000023334
ENSG00000173681
BCLAF1 and THRAP3 family member 3
Tissue enhanced
Detected in all
epididymis:
53.3
BCO1
ENSSSCG00000036572
ENSG00000135697
Beta,beta-carotene 15,15'-dioxygenase
Tissue enhanced
Detected in all
liver:
46.7
small intestine:
30.2
BCORL1
ENSSSCG00000012655
ENSG00000085185
BCL6 corepressor like 1
Low tissue specificity
Detected in all
BCR
ENSSSCG00000010052
ENSG00000186716
BCR, RhoGEF and GTPase activating protein
Low tissue specificity
Detected in all
BCS1L
ENSSSCG00000035775
ENSG00000074582
BCS1-like
Low tissue specificity
Detected in all
BDH1
ENSSSCG00000024109
ENSG00000161267
3-hydroxybutyrate dehydrogenase 1
Tissue enhanced
Detected in all
large intestine:
45.8
liver:
81.6
BDH2
ENSSSCG00000022282
ENSG00000164039
3-hydroxybutyrate dehydrogenase 2
Low tissue specificity
Detected in all
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