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UMAP gene cluster
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Keyword
Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
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Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
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Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15211 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
NAGA
ENSSSCG00000000050
ENSG00000198951
Alpha-N-acetylgalactosaminidase precursor
Low tissue specificity
Detected in all
NAGK
ENSSSCG00000008316
ENSG00000124357
N-acetylglucosamine kinase
Tissue enriched
Detected in all
lens:
122.9
NAGLU
ENSSSCG00000035147
ENSG00000108784
N-acetyl-alpha-glucosaminidase
Low tissue specificity
Detected in all
NAGPA
ENSSSCG00000007925
ENSG00000103174
N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase precursor
Low tissue specificity
Detected in all
NAIF1
ENSSSCG00000005630
ENSG00000171169
Nuclear apoptosis inducing factor 1
Low tissue specificity
Detected in all
NALCN
ENSSSCG00000038949
ENSG00000102452
Sodium leak channel, non-selective
Tissue enhanced
Detected in many
brain:
15.2
pineal gland:
14.9
NAMPT
ENSSSCG00000015435
ENSG00000105835
Nicotinamide phosphoribosyltransferase
Tissue enriched
Detected in all
lens:
169.3
NANOS1
ENSSSCG00000040025
ENSG00000188613
Nanos C2HC-type zinc finger 1
Tissue enhanced
Detected in many
male glands:
21.9
synovial tissue:
16.4
NANP
ENSSSCG00000039380
ENSG00000170191
N-acetylneuraminic acid phosphatase
Low tissue specificity
Detected in all
NANS
ENSSSCG00000005373
ENSG00000095380
Sialic acid synthase
Low tissue specificity
Detected in all
NAP1L3
ENSSSCG00000012504
ENSG00000186310
Nucleosome assembly protein 1 like 3
Tissue enhanced
Detected in many
brain:
52.8
NAP1L4
ENSSSCG00000012856
ENSG00000205531
Nucleosome assembly protein 1-like 4
Tissue enriched
Detected in all
lens:
155.7
NAPA
ENSSSCG00000003120
ENSG00000105402
Alpha-soluble NSF attachment protein
Low tissue specificity
Detected in all
NAPB
ENSSSCG00000031219
ENSG00000125814
NSF attachment protein beta
Group enriched
Detected in many
brain:
39.5
pineal gland:
19.0
retina:
14.7
NAPEPLD
ENSSSCG00000022903
ENSG00000161048
N-acyl phosphatidylethanolamine phospholipase D
Tissue enhanced
Detected in all
thyroid gland:
74.2
NAPG
ENSSSCG00000038533
ENSG00000134265
NSF attachment protein gamma
Low tissue specificity
Detected in all
NAPRT
ENSSSCG00000031825
ENSG00000147813
Nicotinate phosphoribosyltransferase
Tissue enhanced
Detected in all
kidney:
50.4
NARF
ENSSSCG00000017126
ENSG00000141562
Nuclear prelamin A recognition factor
Tissue enhanced
Detected in all
lens:
86.9
NARFL
ENSSSCG00000008002
ENSG00000103245
Nuclear prelamin A recognition factor like
Low tissue specificity
Detected in all
NARS
ENSSSCG00000004542
ENSG00000134440
Asparaginyl-tRNA synthetase
Low tissue specificity
Detected in all
NARS2
ENSSSCG00000014893
ENSG00000137513
Asparaginyl-tRNA synthetase 2, mitochondrial
Low tissue specificity
Detected in all
NASP
ENSSSCG00000029573
ENSG00000132780
Nuclear autoantigenic sperm protein
Tissue enhanced
Detected in all
testis:
51.6
NAT10
ENSSSCG00000013304
ENSG00000135372
N-acetyltransferase 10
Low tissue specificity
Detected in all
NAT14
ENSSSCG00000034329
ENSG00000090971
N-acetyltransferase 14 (putative)
Low tissue specificity
Detected in all
NAT6
ENSSSCG00000011403
ENSG00000243477
N-acetyltransferase 6
Tissue enhanced
Detected in all
stomach:
67.9
NAT8
ENSSSCG00000021579
ENSG00000144035
N-acetyltransferase 8 (putative)
Group enriched
Detected in all
kidney:
45.3
liver:
80.8
NAT8L
ENSSSCG00000033541
ENSG00000185818
N-acetyltransferase 8 like
Tissue enriched
Detected in some
brain:
39.9
NAT9
ENSSSCG00000017231
ENSG00000109065
N-acetyltransferase 9
Low tissue specificity
Detected in all
NATD1
ENSSSCG00000033762
ENSG00000274180
N-acetyltransferase domain containing 1
Low tissue specificity
Detected in all
NAV1
ENSSSCG00000010915
ENSG00000134369
Neuron navigator 1
Low tissue specificity
Detected in all
NAV2
ENSSSCG00000013351
ENSG00000166833
Neuron navigator 2
Low tissue specificity
Detected in all
NAV3
ENSSSCG00000029249
ENSG00000067798
Neuron navigator 3
Tissue enhanced
Detected in many
brain:
28.0
NAXD
ENSSSCG00000029502
ENSG00000213995
ATP-dependent (S)-NAD(P)H-hydrate dehydratase isoform 1
Low tissue specificity
Detected in all
NAXE
ENSSSCG00000006480
ENSG00000163382
NAD(P)H-hydrate epimerase precursor
Low tissue specificity
Detected in all
NBAS
ENSSSCG00000008621
ENSG00000151779
Neuroblastoma amplified sequence
Low tissue specificity
Detected in all
NBDY
ENSSSCG00000037192
ENSG00000204272
Negative regulator of P-body association
Low tissue specificity
Detected in all
NBEA
ENSSSCG00000034348
ENSG00000172915
Neurobeachin
Low tissue specificity
Detected in all
NBEAL2
ENSSSCG00000011330
ENSG00000160796
Neurobeachin like 2
Tissue enhanced
Detected in many
stomach:
75.0
NBL1
ENSSSCG00000024669
ENSG00000158747
Neuroblastoma 1, DAN family BMP antagonist
Tissue enhanced
Detected in all
cervix:
154.2
male glands:
140.5
NBN
ENSSSCG00000006127
ENSG00000104320
Nibrin
Low tissue specificity
Detected in all
NBR1
ENSSSCG00000030211
ENSG00000188554
NBR1, autophagy cargo receptor
Low tissue specificity
Detected in all
NCALD
ENSSSCG00000006059
ENSG00000104490
Neurocalcin-delta
Tissue enhanced
Detected in many
brain:
50.1
lens:
34.5
NCAM1
ENSSSCG00000015045
ENSG00000149294
Neural cell adhesion molecule 1
Tissue enhanced
Detected in many
brain:
63.8
lens:
39.5
NCAPD2
ENSSSCG00000000693
ENSG00000010292
Non-SMC condensin I complex subunit D2
Low tissue specificity
Detected in all
NCAPD3
ENSSSCG00000022192
ENSG00000151503
Non-SMC condensin II complex subunit D3
Low tissue specificity
Detected in all
NCAPG
ENSSSCG00000008747
ENSG00000109805
Non-SMC condensin I complex subunit G
Low tissue specificity
Detected in all
NCAPG2
ENSSSCG00000028169
ENSG00000146918
Non-SMC condensin II complex subunit G2
Tissue enhanced
Detected in all
lymphoid tissue:
27.4
testis:
16.8
NCAPH
ENSSSCG00000008125
ENSG00000121152
Non-SMC condensin I complex subunit H
Low tissue specificity
Detected in all
NCAPH2
ENSSSCG00000000965
ENSG00000025770
Condensin-2 complex subunit H2
Low tissue specificity
Detected in all
NCBP1
ENSSSCG00000005366
ENSG00000136937
Nuclear cap binding protein subunit 1
Low tissue specificity
Detected in all
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