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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15044 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ALKAL2
ENSSSCG00000039057
ENSG00000189292
ALK and LTK ligand 2
Tissue enhanced
Detected in all
skin:
24.1
ALKBH1
ENSSSCG00000025906
ENSG00000100601
AlkB homolog 1, histone H2A dioxygenase
Low tissue specificity
Detected in all
ALKBH2
ENSSSCG00000009940
ENSG00000189046
AlkB homolog 2, alpha-ketoglutarate dependent dioxygenase
Low tissue specificity
Detected in all
ALKBH3
ENSSSCG00000040937
ENSG00000166199
AlkB homolog 3, alpha-ketoglutaratedependent dioxygenase
Low tissue specificity
Detected in all
ALKBH4
ENSSSCG00000029300
ENSG00000160993
AlkB homolog 4, lysine demethylase
Low tissue specificity
Detected in all
ALKBH5
ENSSSCG00000035120
ENSG00000091542
AlkB homolog 5, RNA demethylase
Low tissue specificity
Detected in all
ALKBH6
ENSSSCG00000002910
ENSG00000239382
AlkB homolog 6
Tissue enriched
Detected in all
choroid plexus:
92.0
ALKBH7
ENSSSCG00000024254
ENSG00000125652
AlkB homolog 7
Low tissue specificity
Detected in all
ALKBH8
ENSSSCG00000024628
ENSG00000137760
AlkB homolog 8, tRNA methyltransferase
Low tissue specificity
Detected in all
ALMS1
ENSSSCG00000037977
ENSG00000116127
ALMS1, centrosome and basal body associated protein
Tissue enhanced
Detected in all
testis:
85.4
ALOX15
ENSSSCG00000017923
ENSG00000161905
Arachidonate 15-lipoxygenase
Tissue enriched
Detected in many
mesothelial tissue:
243.3
ALOX5
ENSSSCG00000010404
ENSG00000012779
Arachidonate 5-lipoxygenase
Tissue enhanced
Detected in many
brain:
15.5
ALOX5AP
ENSSSCG00000009330
ENSG00000132965
Arachidonate 5-lipoxygenase-activating protein precursor
Tissue enhanced
Detected in many
brain:
30.0
testis:
30.4
ALPK3
ENSSSCG00000034070
ENSG00000136383
Alpha kinase 3
Tissue enhanced
Detected in all
skeletal muscle:
95.8
ALS2
ENSSSCG00000016109
ENSG00000003393
ALS2, alsin Rho guanine nucleotide exchange factor
Tissue enhanced
Detected in all
brain:
52.3
lens:
46.4
ALS2CL
ENSSSCG00000021997
ENSG00000178038
ALS2 C-terminal like
Low tissue specificity
Detected in many
ALX1
ENSSSCG00000036744
ENSG00000180318
ALX homeobox 1
Tissue enhanced
Detected in many
kidney:
16.7
upper respiratory system:
8.8
ALX3
ENSSSCG00000006812
ENSG00000156150
ALX homeobox 3
Tissue enhanced
Detected in many
mesothelial tissue:
16.1
penis:
41.2
AMACR
ENSSSCG00000016822
ENSG00000242110
Alpha-methylacyl-CoA racemase
Tissue enhanced
Detected in all
liver:
62.6
AMBN
ENSSSCG00000008937
ENSG00000178522
Ameloblastin
Tissue enhanced
Detected in many
synovial tissue:
12.6
AMBRA1
ENSSSCG00000013262
ENSG00000110497
Autophagy and beclin 1 regulator 1
Low tissue specificity
Detected in all
AMD1
ENSSSCG00000004392
ENSG00000123505
Adenosylmethionine decarboxylase 1
Low tissue specificity
Detected in all
AMELY
ENSSSCG00000031650
Amelogenin
Low tissue specificity
Detected in many
AMER1
ENSSSCG00000012361
ENSG00000184675
APC membrane recruitment protein 1
Low tissue specificity
Detected in all
AMFR
ENSSSCG00000002822
ENSG00000159461
Autocrine motility factor receptor
Low tissue specificity
Detected in all
AMIGO1
ENSSSCG00000034883
ENSG00000181754
Adhesion molecule with Ig like domain 1
Low tissue specificity
Detected in all
AMIGO2
ENSSSCG00000000810
ENSG00000139211
Adhesion molecule with Ig like domain 2
Tissue enhanced
Detected in many
ovary:
33.6
AMIGO3
ENSSSCG00000011389
ENSG00000176020
Mannose-1-phosphate guanyltransferase beta
Tissue enhanced
Detected in all
male glands:
37.8
AMMECR1
ENSSSCG00000037591
ENSG00000101935
Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
Low tissue specificity
Detected in all
AMMECR1L
ENSSSCG00000028633
ENSG00000144233
AMMECR1 like
Low tissue specificity
Detected in all
AMN1
ENSSSCG00000034407
ENSG00000151743
Antagonist of mitotic exit network 1 homolog
Low tissue specificity
Detected in all
AMOT
ENSSSCG00000012591
ENSG00000126016
Angiomotin
Tissue enhanced
Detected in all
epididymis:
59.2
male glands:
93.4
skeletal muscle:
52.8
AMOTL1
ENSSSCG00000014960
ENSG00000166025
Angiomotin like 1
Tissue enhanced
Detected in all
male glands:
93.3
AMOTL2
ENSSSCG00000011643
ENSG00000114019
Angiomotin like 2
Low tissue specificity
Detected in all
AMPD2
ENSSSCG00000031125
ENSG00000116337
Adenosine monophosphate deaminase 2
Low tissue specificity
Detected in all
AMPD3
ENSSSCG00000022492
ENSG00000133805
Adenosine monophosphate deaminase 3
Low tissue specificity
Detected in all
AMPH
ENSSSCG00000024136
ENSG00000078053
Amphiphysin
Group enriched
Detected in many
brain:
39.6
lens:
56.5
pineal gland:
19.6
pituitary gland:
21.3
retina:
32.4
AMZ2
ENSSSCG00000017264
ENSG00000196704
Archaemetzincin-2
Tissue enhanced
Detected in all
lens:
63.4
ANAPC1
ENSSSCG00000008105
ENSG00000153107
Anaphase promoting complex subunit 1
Low tissue specificity
Detected in all
ANAPC10
ENSSSCG00000033871
ENSG00000164162
Anaphase-promoting complex subunit 10
Low tissue specificity
Detected in all
ANAPC13
ENSSSCG00000033057
ENSG00000129055
Anaphase-promoting complex subunit 13
Tissue enhanced
Detected in all
lens:
87.0
ANAPC15
ENSSSCG00000014806
ENSG00000110200
Anaphase promoting complex subunit 15
Low tissue specificity
Detected in all
ANAPC16
ENSSSCG00000037728
ENSG00000166295
Anaphase-promoting complex subunit 16
Low tissue specificity
Detected in all
ANAPC2
ENSSSCG00000032828
ENSG00000176248
Anaphase promoting complex subunit 2
Low tissue specificity
Detected in all
ANAPC4
ENSSSCG00000025902
ENSG00000053900
Anaphase promoting complex subunit 4
Low tissue specificity
Detected in all
ANAPC5
ENSSSCG00000009814
ENSG00000089053
Anaphase promoting complex subunit 5
Low tissue specificity
Detected in all
ANAPC7
ENSSSCG00000030222
ENSG00000196510
Anaphase promoting complex subunit 7
Low tissue specificity
Detected in all
ANG
ENSSSCG00000031538
ENSG00000214274
Angiogenin
Tissue enhanced
Detected in many
liver:
105.2
ANGEL1
ENSSSCG00000002390
ENSG00000013523
Angel homolog 1
Tissue enhanced
Detected in all
testis:
42.9
ANGEL2
ENSSSCG00000015588
ENSG00000174606
Angel homolog 2
Low tissue specificity
Detected in all
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