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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15044 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
FRAT1
ENSSSCG00000032821
ENSG00000165879
FRAT1, WNT signaling pathway regulator
Low tissue specificity
Detected in many
FRAT2
ENSSSCG00000038904
ENSG00000181274
FRAT2, WNT signaling pathway regulator
Low tissue specificity
Detected in all
FRMD3
ENSSSCG00000010962
ENSG00000172159
FERM domain containing 3
Low tissue specificity
Detected in all
FRMD4A
ENSSSCG00000011056
ENSG00000151474
FERM domain containing 4A
Low tissue specificity
Detected in all
FRMD4B
ENSSSCG00000011511
ENSG00000114541
FERM domain containing 4B
Low tissue specificity
Detected in all
FRMD5
ENSSSCG00000004694
ENSG00000171877
FERM domain containing 5
Tissue enhanced
Detected in many
brain:
33.6
ductus deferens:
26.5
epididymis:
22.0
male glands:
32.1
FRMD6
ENSSSCG00000005027
ENSG00000139926
FERM domain containing 6
Low tissue specificity
Detected in all
FRMD8
ENSSSCG00000012992
ENSG00000126391
FERM domain containing 8
Tissue enhanced
Detected in all
vagus nerve:
47.9
FRRS1
ENSSSCG00000006873
ENSG00000156869
Ferric-chelate reductase 1 precursor
Tissue enhanced
Detected in all
epididymis:
52.6
FRRS1L
ENSSSCG00000038824
ENSG00000260230
Ferric chelate reductase 1 like
Tissue enriched
Detected in many
brain:
27.5
FRS2
ENSSSCG00000000493
ENSG00000166225
Fibroblast growth factor receptor substrate 2
Tissue enhanced
Detected in all
adrenal gland:
80.7
FRS3
ENSSSCG00000001624
ENSG00000137218
Fibroblast growth factor receptor substrate 3
Tissue enhanced
Detected in all
testis:
21.3
FRY
ENSSSCG00000009338
ENSG00000073910
FRY microtubule binding protein
Tissue enhanced
Detected in all
cartilage:
79.0
FRYL
ENSSSCG00000008826
ENSG00000075539
FRY like transcription coactivator
Low tissue specificity
Detected in all
FRZB
ENSSSCG00000016018
ENSG00000162998
Secreted frizzled-related protein 3 precursor
Tissue enhanced
Detected in many
heart:
72.7
pineal gland:
62.3
FSCN1
ENSSSCG00000007586
ENSG00000075618
Fascin
Tissue enhanced
Detected in many
brain:
55.1
FSCN2
ENSSSCG00000026155
ENSG00000186765
Fascin actin-bundling protein 2, retinal
Tissue enhanced
Detected in many
choroid plexus:
22.9
pineal gland:
21.6
retina:
57.2
FSD1L
ENSSSCG00000005426
ENSG00000106701
Fibronectin type III and SPRY domain containing 1 like
Tissue enhanced
Detected in all
choroid plexus:
46.0
FSHB
ENSSSCG00000013328
ENSG00000131808
Follitropin subunit beta
Tissue enriched
Detected in many
pituitary gland:
353.5
FST
ENSSSCG00000016892
ENSG00000134363
Follistatin precursor
Tissue enriched
Detected in many
ovary:
68.9
FSTL1
ENSSSCG00000039426
ENSG00000163430
Follistatin like 1
Tissue enhanced
Detected in all
mesothelial tissue:
125.1
FSTL3
ENSSSCG00000037102
ENSG00000070404
Follistatin like 3
Tissue enhanced
Detected in many
ovary:
73.2
FSTL4
ENSSSCG00000014293
ENSG00000053108
Follistatin like 4
Tissue enhanced
Detected in many
adrenal gland:
36.7
brain:
13.5
FTL
ENSSSCG00000003153
ENSG00000087086
Ferritin light chain
Tissue enhanced
Detected in all
lens:
546.5
FTO
ENSSSCG00000035949
ENSG00000140718
Alpha-ketoglutarate-dependent dioxygenase FTO
Low tissue specificity
Detected in all
FTSJ1
ENSSSCG00000025599
ENSG00000068438
Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
Low tissue specificity
Detected in all
FTSJ3
ENSSSCG00000017288
ENSG00000108592
FtsJ RNA methyltransferase homolog 3
Low tissue specificity
Detected in all
FUBP1
ENSSSCG00000003771
ENSG00000162613
Far upstream element binding protein 1
Low tissue specificity
Detected in all
FUBP3
ENSSSCG00000005702
ENSG00000107164
Far upstream element-binding protein 3
Low tissue specificity
Detected in all
FUCA1
ENSSSCG00000027659
ENSG00000179163
Tissue alpha-L-fucosidase precursor
Low tissue specificity
Detected in all
FUCA2
ENSSSCG00000004133
ENSG00000001036
Alpha-L-fucosidase 2
Low tissue specificity
Detected in all
FUK
ENSSSCG00000025425
ENSG00000157353
Fucokinase
Low tissue specificity
Detected in all
FUNDC1
ENSSSCG00000012258
ENSG00000069509
FUN14 domain containing 1
Low tissue specificity
Detected in all
FUNDC2
ENSSSCG00000012817
FUN14 domain-containing protein 2
Low tissue specificity
Detected in all
FUOM
ENSSSCG00000010791
ENSG00000148803
Fucose mutarotase
Tissue enhanced
Detected in all
liver:
42.5
male glands:
43.9
FURIN
ENSSSCG00000001817
ENSG00000140564
Furin, paired basic amino acid cleaving enzyme
Tissue enhanced
Detected in all
epididymis:
105.6
FUS
ENSSSCG00000030798
ENSG00000089280
RNA-binding protein FUS
Low tissue specificity
Detected in all
FUT10
ENSSSCG00000038178
ENSG00000172728
Fucosyltransferase 10
Low tissue specificity
Detected in all
FUT11
ENSSSCG00000035523
ENSG00000196968
Fucosyltransferase 11
Low tissue specificity
Detected in all
FUT2
ENSSSCG00000003145
ENSG00000176920
Galactoside 2-alpha-L-fucosyltransferase 2
Tissue enhanced
Detected in many
stomach:
75.6
FUT4
ENSSSCG00000014958
ENSG00000196371
Fucosyltransferase 4
Tissue enhanced
Detected in many
stomach:
57.6
FUT8
ENSSSCG00000002283
ENSG00000033170
Alpha-(1,6)-fucosyltransferase
Tissue enhanced
Detected in all
lymphoid tissue:
51.9
vagus nerve:
63.1
FUZ
ENSSSCG00000003198
ENSG00000010361
Fuzzy planar cell polarity protein
Low tissue specificity
Detected in all
FXN
ENSSSCG00000032999
ENSG00000165060
Frataxin
Low tissue specificity
Detected in all
FXR1
ENSSSCG00000011769
ENSG00000114416
FMR1 autosomal homolog 1
Tissue enhanced
Detected in all
skeletal muscle:
113.4
FXR2
ENSSSCG00000017953
ENSG00000129245
FMR1 autosomal homolog 2
Low tissue specificity
Detected in all
FXYD1
ENSSSCG00000021374
ENSG00000266964
FXYD domain containing ion transport regulator 1
Tissue enhanced
Detected in all
choroid plexus:
197.1
skeletal muscle:
150.3
FXYD6
ENSSSCG00000015083
ENSG00000137726
FXYD domain containing ion transport regulator 6
Low tissue specificity
Detected in all
FYB1
ENSSSCG00000016855
ENSG00000082074
FYN binding protein 1
Tissue enriched
Detected in all
lymphoid tissue:
145.6
FYCO1
ENSSSCG00000011317
ENSG00000163820
FYVE and coiled-coil domain-containing protein 1
Tissue enhanced
Detected in all
skeletal muscle:
65.0
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