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Keyword
Chromosome
1
2
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6
7
8
9
10
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
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15146 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PI4KB
ENSSSCG00000006626
ENSG00000143393
Phosphatidylinositol 4-kinase beta
Low tissue specificity
Detected in all
PIANP
ENSSSCG00000000692
ENSG00000139200
PILR alpha associated neural protein
Tissue enriched
Detected in some
brain:
52.6
PIAS1
ENSSSCG00000004958
ENSG00000033800
Protein inhibitor of activated STAT 1
Low tissue specificity
Detected in all
PIAS2
ENSSSCG00000034730
ENSG00000078043
Protein inhibitor of activated STAT 2
Low tissue specificity
Detected in all
PIAS3
ENSSSCG00000006689
ENSG00000131788
Protein inhibitor of activated STAT 3
Low tissue specificity
Detected in all
PIAS4
ENSSSCG00000022066
ENSG00000105229
Protein inhibitor of activated STAT 4
Low tissue specificity
Detected in all
PIBF1
ENSSSCG00000024722
ENSG00000083535
Progesterone immunomodulatory binding factor 1
Low tissue specificity
Detected in all
PICALM
ENSSSCG00000014913
ENSG00000073921
Phosphatidylinositol-binding clathrin assembly protein
Low tissue specificity
Detected in all
PICK1
ENSSSCG00000000114
ENSG00000100151
Protein interacting with PRKCA 1
Tissue enhanced
Detected in all
vagus nerve:
71.9
PID1
ENSSSCG00000035058
ENSG00000153823
PTB-containing, cubilin and LRP1-interacting protein
Tissue enhanced
Detected in all
cartilage:
70.1
choroid plexus:
63.6
PIDD1
ENSSSCG00000012843
ENSG00000177595
P53-induced death domain protein 1
Low tissue specificity
Detected in all
PIEZO1
ENSSSCG00000035230
ENSG00000103335
Piezo type mechanosensitive ion channel component 1
Low tissue specificity
Detected in many
PIGA
ENSSSCG00000012134
ENSG00000165195
Phosphatidylinositol glycan anchor biosynthesis class A
Low tissue specificity
Detected in all
PIGB
ENSSSCG00000032619
ENSG00000069943
Phosphatidylinositol glycan anchor biosynthesis class B
Low tissue specificity
Detected in all
PIGC
ENSSSCG00000015486
ENSG00000135845
Phosphatidylinositol N-acetylglucosaminyltransferase subunit C
Low tissue specificity
Detected in all
PIGG
ENSSSCG00000039991
ENSG00000174227
Phosphatidylinositol glycan anchor biosynthesis class G
Low tissue specificity
Detected in all
PIGK
ENSSSCG00000038329
ENSG00000142892
GPI-anchor transamidase precursor
Tissue enhanced
Detected in all
pituitary gland:
32.3
PIGM
ENSSSCG00000038017
ENSG00000143315
Phosphatidylinositol glycan anchor biosynthesis class M
Low tissue specificity
Detected in all
PIGN
ENSSSCG00000004901
ENSG00000197563
Phosphatidylinositol glycan anchor biosynthesis class N
Low tissue specificity
Detected in all
PIGO
ENSSSCG00000005303
ENSG00000165282
Phosphatidylinositol glycan anchor biosynthesis class O
Low tissue specificity
Detected in all
PIGP
ENSSSCG00000012061
ENSG00000185808
Phosphatidylinositol N-acetylglucosaminyltransferase subunit P
Tissue enhanced
Detected in all
choroid plexus:
51.7
lens:
99.5
PIGQ
ENSSSCG00000007992
ENSG00000007541
Phosphatidylinositol glycan anchor biosynthesis class Q
Low tissue specificity
Detected in all
PIGS
ENSSSCG00000026706
ENSG00000087111
GPI transamidase component PIG-S
Tissue enhanced
Detected in all
retina:
62.4
PIGT
ENSSSCG00000021861
ENSG00000124155
Phosphatidylinositol glycan anchor biosynthesis class T
Low tissue specificity
Detected in all
PIGU
ENSSSCG00000007282
ENSG00000101464
Phosphatidylinositol glycan anchor biosynthesis class U protein precursor
Low tissue specificity
Detected in all
PIGV
ENSSSCG00000040007
ENSG00000060642
Phosphatidylinositol glycan anchor biosynthesis class V
Low tissue specificity
Detected in all
PIGW
ENSSSCG00000035006
ENSG00000277161
Phosphatidylinositol glycan anchor biosynthesis class W
Low tissue specificity
Detected in many
PIGX
ENSSSCG00000026934
ENSG00000163964
Phosphatidylinositol glycan anchor biosynthesis class X
Low tissue specificity
Detected in all
PIGY
ENSSSCG00000009211
ENSG00000145337
Protein preY, mitochondrial
Low tissue specificity
Detected in all
PIGZ
ENSSSCG00000029291
ENSG00000119227
Phosphatidylinositol glycan anchor biosynthesis class Z
Tissue enhanced
Detected in all
lymphoid tissue:
17.4
PIH1D1
ENSSSCG00000003169
ENSG00000104872
PIH1 domain-containing protein 1
Low tissue specificity
Detected in all
PIH1D2
ENSSSCG00000015031
ENSG00000150773
PIH1 domain containing 2
Tissue enhanced
Detected in many
fallopian tube:
24.0
testis:
38.6
PIK3AP1
ENSSSCG00000010509
ENSG00000155629
Phosphoinositide 3-kinase adapter protein 1
Tissue enhanced
Detected in all
lymphoid tissue:
49.3
PIK3C2A
ENSSSCG00000025406
ENSG00000011405
Phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha
Low tissue specificity
Detected in all
PIK3C2B
ENSSSCG00000015283
ENSG00000133056
Phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta
Low tissue specificity
Detected in all
PIK3C3
ENSSSCG00000003749
ENSG00000078142
Phosphatidylinositol 3-kinase catalytic subunit type 3
Low tissue specificity
Detected in all
PIK3CA
ENSSSCG00000030413
ENSG00000121879
Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha
Low tissue specificity
Detected in all
PIK3CB
ENSSSCG00000021203
ENSG00000051382
Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta
Tissue enhanced
Detected in all
lens:
43.0
PIK3CD
ENSSSCG00000003395
ENSG00000171608
Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta
Tissue enhanced
Detected in all
lymphoid tissue:
41.1
stomach:
40.1
PIK3CG
ENSSSCG00000027272
ENSG00000105851
Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform
Tissue enhanced
Detected in many
lymphoid tissue:
27.6
PIK3IP1
ENSSSCG00000010026
ENSG00000100100
Phosphoinositide-3-kinase interacting protein 1
Low tissue specificity
Detected in all
PIK3R1
ENSSSCG00000016958
ENSG00000145675
Phosphoinositide-3-kinase regulatory subunit 1
Low tissue specificity
Detected in all
PIK3R3
ENSSSCG00000003909
ENSG00000117461
Phosphoinositide-3-kinase regulatory subunit 3
Tissue enhanced
Detected in all
brain:
52.5
PIK3R4
ENSSSCG00000029094
ENSG00000196455
Phosphoinositide-3-kinase regulatory subunit 4
Low tissue specificity
Detected in all
PIK3R5
ENSSSCG00000017991
ENSG00000141506
Phosphoinositide 3-kinase regulatory subunit 5
Tissue enhanced
Detected in many
lymphoid tissue:
43.2
stomach:
27.3
PIK3R6
ENSSSCG00000017990
ENSG00000276231
Phosphoinositide-3-kinase regulatory subunit 6
Low tissue specificity
Detected in all
PIKFYVE
ENSSSCG00000016147
ENSG00000115020
Phosphoinositide kinase, FYVE-type zinc finger containing
Low tissue specificity
Detected in all
PIM1
ENSSSCG00000001573
ENSG00000137193
Pim-1 proto-oncogene, serine/threonine kinase
Low tissue specificity
Detected in all
PIM2
ENSSSCG00000028964
ENSG00000102096
Pim-2 proto-oncogene, serine/threonine kinase
Tissue enhanced
Detected in all
ovary:
31.1
PIM3
ENSSSCG00000032936
ENSG00000198355
Pim-3 proto-oncogene, serine/threonine kinase
Low tissue specificity
Detected in all
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