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UMAP gene cluster
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Keyword
Chromosome
1
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7
8
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15146 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PCNX3
ENSSSCG00000012983
ENSG00000197136
Pecanex homolog 3
Low tissue specificity
Detected in all
PCNX4
ENSSSCG00000005082
ENSG00000126773
Pecanex homolog 4
Low tissue specificity
Detected in all
PCOLCE
ENSSSCG00000027466
ENSG00000106333
Procollagen C-endopeptidase enhancer
Tissue enhanced
Detected in many
cartilage:
123.2
synovial tissue:
132.1
PCOLCE2
ENSSSCG00000011683
ENSG00000163710
Procollagen C-endopeptidase enhancer 2
Tissue enriched
Detected in many
ovary:
107.9
PCSK1
ENSSSCG00000014169
ENSG00000175426
Neuroendocrine convertase 1 precursor
Group enriched
Detected in some
brain:
28.5
pineal gland:
47.8
pituitary gland:
42.7
PCSK1N
ENSSSCG00000021328
ENSG00000102109
Proprotein convertase subtilisin/kexin type 1 inhibitor
Tissue enhanced
Detected in many
brain:
67.0
pituitary gland:
47.2
PCSK5
ENSSSCG00000023520
ENSG00000099139
Proprotein convertase subtilisin/kexin type 5
Tissue enhanced
Detected in many
cartilage:
36.4
mesothelial tissue:
34.3
small intestine:
38.7
PCSK6
ENSSSCG00000005785
ENSG00000140479
Proprotein convertase subtilisin/kexin type 6
Tissue enhanced
Detected in many
brain:
47.5
liver:
57.1
synovial tissue:
32.3
PCSK7
ENSSSCG00000015072
ENSG00000160613
Proprotein convertase subtilisin/kexin type 7
Tissue enhanced
Detected in all
stomach:
47.6
PCYOX1
ENSSSCG00000029790
ENSG00000116005
Prenylcysteine oxidase 1
Low tissue specificity
Detected in all
PCYOX1L
ENSSSCG00000014433
ENSG00000145882
Prenylcysteine oxidase 1 like
Tissue enhanced
Detected in all
epididymis:
80.0
lens:
111.7
PCYT1A
ENSSSCG00000011845
ENSG00000161217
Phosphate cytidylyltransferase 1, choline, alpha
Low tissue specificity
Detected in all
PCYT2
ENSSSCG00000039650
ENSG00000185813
Phosphate cytidylyltransferase 2, ethanolamine
Low tissue specificity
Detected in all
PDAP1
ENSSSCG00000033450
ENSG00000106244
PDGFA associated protein 1
Low tissue specificity
Detected in all
PDCD10
ENSSSCG00000011739
ENSG00000114209
Programmed cell death protein 10
Low tissue specificity
Detected in all
PDCD11
ENSSSCG00000010599
ENSG00000148843
Programmed cell death 11
Low tissue specificity
Detected in all
PDCD1LG2
ENSSSCG00000032561
ENSG00000197646
Programmed cell death 1 ligand 2 precursor
Tissue enhanced
Detected in many
lymphoid tissue:
24.9
PDCD4
ENSSSCG00000010627
ENSG00000150593
Programmed cell death 4
Tissue enhanced
Detected in all
male glands:
124.6
PDCD6
ENSSSCG00000032090
ENSG00000249915
Programmed cell death 6
Low tissue specificity
Detected in all
PDCD6IP
ENSSSCG00000011237
ENSG00000170248
Programmed cell death 6 interacting protein
Low tissue specificity
Detected in all
PDCD7
ENSSSCG00000004926
ENSG00000090470
Programmed cell death 7
Low tissue specificity
Detected in all
PDCL
ENSSSCG00000038554
ENSG00000136940
Phosducin like
Low tissue specificity
Detected in all
PDCL3
ENSSSCG00000033885
ENSG00000115539
Phosducin like 3
Low tissue specificity
Detected in all
PDE10A
ENSSSCG00000004027
ENSG00000112541
Phosphodiesterase 10A
Tissue enhanced
Detected in many
brain:
69.6
PDE1C
ENSSSCG00000016668
ENSG00000154678
Phosphodiesterase 1C
Tissue enhanced
Detected in many
brain:
29.8
pineal gland:
34.2
PDE2A
ENSSSCG00000029388
ENSG00000186642
Phosphodiesterase 2A
Tissue enhanced
Detected in many
brain:
54.7
PDE3B
ENSSSCG00000013388
ENSG00000152270
Phosphodiesterase 3B
Tissue enhanced
Detected in all
lens:
44.1
PDE4A
ENSSSCG00000013642
ENSG00000065989
CAMP-specific 3',5'-cyclic phosphodiesterase 4A
Tissue enhanced
Detected in many
male glands:
60.9
skeletal muscle:
47.4
PDE4D
ENSSSCG00000016929
ENSG00000113448
Phosphodiesterase 4D
Tissue enhanced
Detected in many
cartilage:
53.8
PDE5A
ENSSSCG00000009106
ENSG00000138735
Phosphodiesterase 5A
Tissue enhanced
Detected in many
smooth muscle:
69.7
PDE6D
ENSSSCG00000016279
ENSG00000156973
Phosphodiesterase 6D
Low tissue specificity
Detected in all
PDE7A
ENSSSCG00000006218
ENSG00000205268
Phosphodiesterase 7A
Tissue enhanced
Detected in all
cartilage:
51.4
PDE7B
ENSSSCG00000004165
ENSG00000171408
Phosphodiesterase 7B
Low tissue specificity
Detected in all
PDE9A
ENSSSCG00000030016
ENSG00000160191
Phosphodiesterase 9A
Low tissue specificity
Detected in all
PDGFA
ENSSSCG00000007541
ENSG00000197461
Platelet derived growth factor subunit A
Low tissue specificity
Detected in all
PDGFB
ENSSSCG00000033327
ENSG00000100311
Platelet derived growth factor subunit B
Low tissue specificity
Detected in many
PDGFC
ENSSSCG00000024960
ENSG00000145431
Platelet derived growth factor C
Low tissue specificity
Detected in many
PDGFD
ENSSSCG00000014994
ENSG00000170962
Platelet derived growth factor D
Low tissue specificity
Detected in all
PDGFRA
ENSSSCG00000008841
ENSG00000134853
Platelet-derived growth factor receptor alpha precursor
Tissue enhanced
Detected in all
cartilage:
67.5
ovary:
55.7
PDGFRB
ENSSSCG00000022741
ENSG00000113721
Platelet derived growth factor receptor beta
Low tissue specificity
Detected in many
PDGFRL
ENSSSCG00000006988
ENSG00000104213
Platelet derived growth factor receptor like
Tissue enhanced
Detected in many
cornea:
98.9
PDHB
ENSSSCG00000025881
ENSG00000168291
Pyruvate dehydrogenase E1 component subunit beta, mitochondrial
Low tissue specificity
Detected in all
PDHX
ENSSSCG00000013298
ENSG00000110435
Pyruvate dehydrogenase complex component X
Low tissue specificity
Detected in all
PDIA3
ENSSSCG00000004700
ENSG00000167004
Protein disulfide-isomerase A3 precursor
Low tissue specificity
Detected in all
PDIA4
ENSSSCG00000015453
ENSG00000155660
Protein disulfide-isomerase A4 precursor
Low tissue specificity
Detected in all
PDIA5
ENSSSCG00000011870
ENSG00000065485
Protein disulfide isomerase family A member 5
Low tissue specificity
Detected in all
PDIA6
ENSSSCG00000008633
ENSG00000143870
Protein disulfide-isomerase A6 precursor
Low tissue specificity
Detected in all
PDIK1L
ENSSSCG00000030660
ENSG00000175087
PDLIM1 interacting kinase 1 like
Low tissue specificity
Detected in all
PDILT
ENSSSCG00000007860
ENSG00000169340
Protein disulfide isomerase like, testis expressed
Tissue enriched
Detected in many
testis:
58.5
PDK2
ENSSSCG00000027198
ENSG00000005882
Pyruvate dehydrogenase kinase 2
Low tissue specificity
Detected in all
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