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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
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15957 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
HDHD3
ENSSSCG00000039861
ENSG00000119431
Haloacid dehalogenase like hydrolase domain containing 3
Tissue enhanced
Detected in all
kidney:
27.6
HDHD5
ENSSSCG00000000764
ENSG00000069998
Haloacid dehalogenase like hydrolase domain containing 5
Low tissue specificity
Detected in all
HDLBP
ENSSSCG00000016379
ENSG00000115677
High density lipoprotein binding protein
Low tissue specificity
Detected in all
HEATR1
ENSSSCG00000010145
ENSG00000119285
HEAT repeat containing 1
Low tissue specificity
Detected in all
HEATR3
ENSSSCG00000039577
ENSG00000155393
HEAT repeat containing 3
Low tissue specificity
Detected in all
HEATR5A
ENSSSCG00000001970
ENSG00000129493
HEAT repeat containing 5A
Low tissue specificity
Detected in all
HEATR5B
ENSSSCG00000008498
ENSG00000008869
HEAT repeat containing 5B
Low tissue specificity
Detected in all
HEATR6
ENSSSCG00000038478
ENSG00000068097
HEAT repeat containing 6
Tissue enhanced
Detected in all
salivary gland:
81.5
HEATR9
ENSSSCG00000017706
ENSG00000270379
HEAT repeat containing 9
Group enriched
Detected in many
choroid plexus:
8.2
testis:
22.9
HEBP1
ENSSSCG00000040275
ENSG00000013583
Heme-binding protein 1
Tissue enhanced
Detected in all
lymphoid tissue:
31.5
male glands:
38.7
HECA
ENSSSCG00000004144
ENSG00000112406
Hdc homolog, cell cycle regulator
Low tissue specificity
Detected in all
HECTD1
ENSSSCG00000001971
ENSG00000092148
HECT domain E3 ubiquitin protein ligase 1
Low tissue specificity
Detected in all
HECTD2
ENSSSCG00000020912
ENSG00000165338
HECT domain E3 ubiquitin protein ligase 2
Tissue enhanced
Detected in many
brain:
43.7
male glands:
22.5
HECTD3
ENSSSCG00000003923
ENSG00000126107
HECT domain E3 ubiquitin protein ligase 3
Low tissue specificity
Detected in all
HECTD4
ENSSSCG00000009885
ENSG00000173064
HECT domain E3 ubiquitin protein ligase 4
Low tissue specificity
Detected in all
HECW2
ENSSSCG00000016068
ENSG00000138411
E3 ubiquitin-protein ligase HECW2
Low tissue specificity
Detected in many
HEG1
ENSSSCG00000011859
ENSG00000173706
Heart development protein with EGF like domains 1
Low tissue specificity
Detected in all
HELB
ENSSSCG00000000477
ENSG00000127311
DNA helicase B
Low tissue specificity
Detected in all
HELLS
ENSSSCG00000010486
ENSG00000119969
Helicase, lymphoid specific
Low tissue specificity
Detected in all
HELQ
ENSSSCG00000009236
ENSG00000163312
Helicase, POLQ like
Low tissue specificity
Detected in all
HELZ
ENSSSCG00000017272
ENSG00000198265
Helicase with zinc finger
Low tissue specificity
Detected in all
HEMGN
ENSSSCG00000005371
ENSG00000136929
Hemogen
Tissue enriched
Detected in all
testis:
93.2
HEMK1
ENSSSCG00000025272
ENSG00000114735
HemK methyltransferase family member 1
Low tissue specificity
Detected in all
HENMT1
ENSSSCG00000006846
ENSG00000162639
HEN methyltransferase 1
Tissue enhanced
Detected in many
testis:
20.5
HEPACAM
ENSSSCG00000015205
ENSG00000165478
Hepatic and glial cell adhesion molecule
Tissue enhanced
Detected in all
pituitary gland:
137.0
HEPACAM2
ENSSSCG00000025870
ENSG00000188175
HEPACAM family member 2
Tissue enhanced
Detected in all
large intestine:
36.4
pituitary gland:
41.9
HERC1
ENSSSCG00000004561
ENSG00000103657
HECT and RLD domain containing E3 ubiquitin protein ligase family member 1
Low tissue specificity
Detected in all
HERC2
ENSSSCG00000015853
ENSG00000128731
HECT and RLD domain containing E3 ubiquitin protein ligase 2
Low tissue specificity
Detected in all
HERC3
ENSSSCG00000009208
ENSG00000138641
HECT and RLD domain containing E3 ubiquitin protein ligase 3
Low tissue specificity
Detected in all
HERC4
ENSSSCG00000038913
ENSG00000148634
HECT and RLD domain containing E3 ubiquitin protein ligase 4
Low tissue specificity
Detected in all
HERC5
ENSSSCG00000030548
ENSG00000138646
HECT and RLD domain containing E3 ubiquitin protein ligase 5
Low tissue specificity
Detected in many
HERC6
ENSSSCG00000021712
ENSG00000138642
HECT and RLD domain containing E3 ubiquitin protein ligase family member 6
Low tissue specificity
Detected in many
HERPUD1
ENSSSCG00000040663
ENSG00000051108
Homocysteine inducible ER protein with ubiquitin like domain 1
Low tissue specificity
Detected in all
HERPUD2
ENSSSCG00000027389
ENSG00000122557
HERPUD family member 2
Low tissue specificity
Detected in all
HES1
ENSSSCG00000031356
ENSG00000114315
Transcription factor HES-1
Tissue enhanced
Detected in all
urinary bladder:
45.1
HES2
ENSSSCG00000034297
ENSG00000069812
Hes family bHLH transcription factor 2
Tissue enhanced
Detected in many
epididymis:
27.7
HES4
ENSSSCG00000035420
ENSG00000188290
Hes family bHLH transcription factor 4
Low tissue specificity
Detected in all
HES6
ENSSSCG00000016342
ENSG00000144485
Hes family bHLH transcription factor 6
Tissue enhanced
Detected in many
adipose tissue:
24.4
HESX1
ENSSSCG00000021207
ENSG00000163666
HESX homeobox 1
Low tissue specificity
Detected in all
HEXB
ENSSSCG00000014073
ENSG00000049860
Hexosaminidase subunit beta
Group enriched
Detected in many
epididymis:
222.2
male glands:
59.9
HEXIM2
ENSSSCG00000017335
ENSG00000168517
Hexamethylene bisacetamide inducible 2
Low tissue specificity
Detected in all
HEY1
ENSSSCG00000006159
ENSG00000164683
Hes related family bHLH transcription factor with YRPW motif 1
Low tissue specificity
Detected in all
HEY2
ENSSSCG00000004223
ENSG00000135547
Hairy/enhancer-of-split related with YRPW motif protein 2
Tissue enhanced
Detected in many
heart:
20.6
penis:
24.7
HEYL
ENSSSCG00000038956
ENSG00000163909
Hes related family bHLH transcription factor with YRPW motif-like
Low tissue specificity
Detected in many
HFE
ENSSSCG00000037682
ENSG00000010704
Hemochromatosis
Tissue enhanced
Detected in all
choroid plexus:
41.3
HFM1
ENSSSCG00000006912
ENSG00000162669
HFM1, ATP dependent DNA helicase homolog
Low tissue specificity
Detected in all
HGD
ENSSSCG00000021227
ENSG00000113924
Homogentisate 1,2-dioxygenase
Tissue enriched
Detected in many
liver:
91.2
HGF
ENSSSCG00000015403
ENSG00000019991
Hepatocyte growth factor
Tissue enhanced
Detected in many
liver:
19.6
HGFAC
ENSSSCG00000008700
ENSG00000109758
HGF activator
Tissue enriched
Detected in many
liver:
93.5
HGH1
ENSSSCG00000026590
ENSG00000235173
HGH1 homolog
Low tissue specificity
Detected in all
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