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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
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Disease
Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15957 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
GRPEL2
ENSSSCG00000014432
ENSG00000164284
GrpE protein homolog 2, mitochondrial
Low tissue specificity
Detected in all
GRPR
ENSSSCG00000012144
ENSG00000126010
Gastrin-releasing peptide receptor
Low tissue specificity
Detected in all
GRSF1
ENSSSCG00000008940
ENSG00000132463
G-rich RNA sequence binding factor 1
Low tissue specificity
Detected in all
GRTP1
ENSSSCG00000009554
ENSG00000139835
Growth hormone regulated TBC protein 1
Tissue enhanced
Detected in many
stomach:
40.1
GRWD1
ENSSSCG00000003134
ENSG00000105447
Glutamate rich WD repeat containing 1
Low tissue specificity
Detected in all
GRXCR1
ENSSSCG00000008804
ENSG00000215203
Glutaredoxin and cysteine rich domain containing 1
Tissue enriched
Detected in many
testis:
29.6
GRXCR2
ENSSSCG00000040306
ENSG00000204928
Glutaredoxin and cysteine rich domain containing 2
Low tissue specificity
Detected in all
GSC
ENSSSCG00000002490
ENSG00000133937
Goosecoid homeobox
Tissue enhanced
Detected in some
adipose tissue:
13.4
aorta:
8.0
mesothelial tissue:
14.0
mouth:
8.2
upper respiratory system:
14.1
GSC2
ENSSSCG00000010115
ENSG00000063515
Goosecoid homeobox 2
Low tissue specificity
Detected in many
GSDMA
ENSSSCG00000017490
ENSG00000167914
Gasdermin A
Tissue enriched
Detected in some
skin:
39.3
GSDMD
ENSSSCG00000006955
ENSG00000104518
Gasdermin D
Low tissue specificity
Detected in all
GSDME
ENSSSCG00000016716
ENSG00000105928
Gasdermin E
Tissue enhanced
Detected in many
choroid plexus:
22.5
GSE1
ENSSSCG00000002664
ENSG00000131149
Gse1 coiled-coil protein
Tissue enhanced
Detected in all
lymphoid tissue:
79.7
GSG1L
ENSSSCG00000022785
ENSG00000169181
GSG1 like
Low tissue specificity
Detected in all
GSK3A
ENSSSCG00000003035
ENSG00000105723
Glycogen synthase kinase-3 alpha
Low tissue specificity
Detected in all
GSK3B
ENSSSCG00000011889
ENSG00000082701
Glycogen synthase kinase-3 beta
Low tissue specificity
Detected in all
GSN
ENSSSCG00000037508
ENSG00000148180
Gelsolin
Tissue enhanced
Detected in all
cartilage:
266.2
heart:
223.1
penis:
327.1
GSPT1
ENSSSCG00000021118
ENSG00000103342
G1 to S phase transition 1
Tissue enhanced
Detected in all
lens:
116.6
GSPT2
ENSSSCG00000012317
ENSG00000189369
G1 to S phase transition 2
Low tissue specificity
Detected in all
GSR
ENSSSCG00000015844
ENSG00000104687
Glutathione-disulfide reductase
Tissue enhanced
Detected in all
large intestine:
60.8
GSS
ENSSSCG00000007287
ENSG00000100983
Glutathione synthetase
Tissue enriched
Detected in all
lens:
109.2
GSTA4
ENSSSCG00000002627
ENSG00000170899
Glutathione S-transferase A4
Tissue enhanced
Detected in many
brain:
43.4
lens:
47.1
pineal gland:
36.6
GSTCD
ENSSSCG00000023548
ENSG00000138780
Glutathione S-transferase C-terminal domain containing
Low tissue specificity
Detected in all
GSTK1
ENSSSCG00000035615
ENSG00000197448
Glutathione S-transferase kappa 1
Low tissue specificity
Detected in all
GSTO1
ENSSSCG00000022351
ENSG00000148834
Glutathione S-transferase omega-1
Tissue enhanced
Detected in many
adrenal gland:
43.6
liver:
46.3
GSTO2
ENSSSCG00000030271
ENSG00000065621
Glutathione S-transferase omega 2
Tissue enhanced
Detected in all
lymphoid tissue:
22.8
testis:
20.8
GSTP1
ENSSSCG00000032003
ENSG00000084207
Glutathione S-transferase pi 1
Tissue enhanced
Detected in all
lens:
170.7
GSTZ1
ENSSSCG00000002396
ENSG00000100577
Maleylacetoacetate isomerase
Tissue enhanced
Detected in all
liver:
86.1
GTDC1
ENSSSCG00000015670
ENSG00000121964
Glycosyltransferase like domain containing 1
Low tissue specificity
Detected in all
GTF2A1
ENSSSCG00000002411
ENSG00000165417
General transcription factor IIA subunit 1
Low tissue specificity
Detected in all
GTF2B
ENSSSCG00000006926
ENSG00000137947
General transcription factor IIB
Low tissue specificity
Detected in all
GTF2E2
ENSSSCG00000015845
ENSG00000197265
Transcription initiation factor IIE subunit beta
Low tissue specificity
Detected in all
GTF2F1
ENSSSCG00000013539
ENSG00000125651
General transcription factor IIF subunit 1
Low tissue specificity
Detected in all
GTF2F2
ENSSSCG00000034156
ENSG00000188342
General transcription factor IIF subunit 2
Low tissue specificity
Detected in all
GTF2H1
ENSSSCG00000013367
ENSG00000110768
General transcription factor IIH subunit 1
Low tissue specificity
Detected in all
GTF2H3
ENSSSCG00000009769
ENSG00000111358
General transcription factor IIH subunit 3
Low tissue specificity
Detected in all
GTF2H4
ENSSSCG00000001383
ENSG00000213780
General transcription factor IIH subunit 4
Low tissue specificity
Detected in all
GTF2H5
ENSSSCG00000024019
ENSG00000272047
General transcription factor IIH subunit 5
Low tissue specificity
Detected in all
GTF2I
ENSSSCG00000007721
ENSG00000263001
General transcription factor IIi
Low tissue specificity
Detected in all
GTF2IRD1
ENSSSCG00000007720
ENSG00000006704
GTF2I repeat domain containing 1
Low tissue specificity
Detected in all
GTF3A
ENSSSCG00000009305
ENSG00000122034
General transcription factor IIIA
Low tissue specificity
Detected in all
GTF3C1
ENSSSCG00000007815
ENSG00000077235
General transcription factor IIIC subunit 1
Low tissue specificity
Detected in all
GTF3C2
ENSSSCG00000032798
ENSG00000115207
General transcription factor IIIC subunit 2
Low tissue specificity
Detected in all
GTF3C3
ENSSSCG00000016070
ENSG00000119041
General transcription factor IIIC subunit 3
Low tissue specificity
Detected in all
GTF3C4
ENSSSCG00000005731
ENSG00000125484
General transcription factor IIIC subunit 4
Low tissue specificity
Detected in all
GTF3C5
ENSSSCG00000032110
ENSG00000148308
General transcription factor IIIC subunit 5
Low tissue specificity
Detected in all
GTF3C6
ENSSSCG00000004393
ENSG00000155115
General transcription factor IIIC subunit 6
Low tissue specificity
Detected in all
GTPBP1
ENSSSCG00000000095
ENSG00000100226
GTP binding protein 1
Low tissue specificity
Detected in all
GTPBP2
ENSSSCG00000001689
ENSG00000172432
GTP binding protein 2
Low tissue specificity
Detected in all
GTPBP3
ENSSSCG00000038440
ENSG00000130299
GTP binding protein 3, mitochondrial
Low tissue specificity
Detected in all
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