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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15957 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
DOK3
ENSSSCG00000031653
ENSG00000146094
Docking protein 3
Tissue enhanced
Detected in many
lymphoid tissue:
30.5
DOK4
ENSSSCG00000029165
ENSG00000125170
Docking protein 4
Tissue enriched
Detected in all
lens:
53.0
DOLK
ENSSSCG00000005666
ENSG00000175283
Dolichol kinase
Low tissue specificity
Detected in all
DOLPP1
ENSSSCG00000031669
ENSG00000167130
Dolichyldiphosphatase 1
Low tissue specificity
Detected in all
DONSON
ENSSSCG00000027089
ENSG00000159147
Downstream neighbor of SON
Low tissue specificity
Detected in all
DOPEY1
ENSSSCG00000004457
ENSG00000083097
Dopey family member 1
Low tissue specificity
Detected in all
DOPEY2
ENSSSCG00000012054
ENSG00000142197
Dopey family member 2
Tissue enriched
Detected in many
male glands:
125.4
DOT1L
ENSSSCG00000013457
ENSG00000104885
DOT1 like histone lysine methyltransferase
Tissue enhanced
Detected in all
testis:
58.9
DPAGT1
ENSSSCG00000015110
ENSG00000172269
Dolichyl-phosphate N-acetylglucosaminephosphotransferase 1
Low tissue specificity
Detected in all
DPCD
ENSSSCG00000010565
ENSG00000166171
Deleted in primary ciliary dyskinesia homolog (mouse)
Tissue enhanced
Detected in all
pineal gland:
63.5
DPEP2
ENSSSCG00000021105
ENSG00000167261
Dipeptidase 2
Tissue enhanced
Detected in many
fallopian tube:
37.2
lung:
14.5
upper respiratory system:
24.9
DPEP3
ENSSSCG00000023514
ENSG00000141096
Dipeptidase 3
Tissue enriched
Detected in all
testis:
25.6
DPF1
ENSSSCG00000025160
ENSG00000011332
Double PHD fingers 1
Low tissue specificity
Detected in all
DPF2
ENSSSCG00000012995
ENSG00000133884
Double PHD fingers 2
Low tissue specificity
Detected in all
DPF3
ENSSSCG00000002333
ENSG00000205683
Double PHD fingers 3
Tissue enhanced
Detected in many
brain:
29.0
liver:
32.4
DPH1
ENSSSCG00000017824
ENSG00000108963
Diphthamide biosynthesis 1
Low tissue specificity
Detected in all
DPH2
ENSSSCG00000036620
ENSG00000132768
DPH2 homolog
Low tissue specificity
Detected in all
DPH3
ENSSSCG00000011196
DPH3 homolog
Tissue enhanced
Detected in all
lens:
48.6
DPH5
ENSSSCG00000006859
ENSG00000117543
Diphthine methyl ester synthase
Low tissue specificity
Detected in all
DPH6
ENSSSCG00000035254
ENSG00000134146
Diphthamine biosynthesis 6
Low tissue specificity
Detected in all
DPH7
ENSSSCG00000031630
ENSG00000148399
Diphthamide biosynthesis 7
Low tissue specificity
Detected in all
DPM1
ENSSSCG00000034952
ENSG00000000419
Dolichol-phosphate mannosyltransferase subunit 1
Low tissue specificity
Detected in all
DPM2
ENSSSCG00000032481
ENSG00000136908
Dolichol phosphate-mannose biosynthesis regulatory protein
Low tissue specificity
Detected in all
DPM3
ENSSSCG00000006528
ENSG00000179085
Dolichyl-phosphate mannosyltransferase subunit 3
Tissue enhanced
Detected in many
pineal gland:
14.0
DPP3
ENSSSCG00000030415
ENSG00000254986
Dipeptidyl peptidase 3
Low tissue specificity
Detected in all
DPP4
ENSSSCG00000015894
ENSG00000197635
Dipeptidyl peptidase 4 Dipeptidyl peptidase 4 membrane form Dipeptidyl peptidase 4 soluble form
Tissue enhanced
Detected in many
liver:
49.9
salivary gland:
49.4
DPP7
ENSSSCG00000033991
ENSG00000176978
Dipeptidyl peptidase 7
Low tissue specificity
Detected in all
DPP8
ENSSSCG00000004934
ENSG00000074603
Dipeptidyl peptidase 8
Low tissue specificity
Detected in all
DPP9
ENSSSCG00000026063
ENSG00000142002
Dipeptidyl peptidase 9
Low tissue specificity
Detected in all
DPT
ENSSSCG00000035937
ENSG00000143196
Dermatopontin
Tissue enhanced
Detected in many
heart:
31.6
smooth muscle:
49.4
DPY19L1
ENSSSCG00000027063
ENSG00000173852
Dpy-19 like C-mannosyltransferase 1
Low tissue specificity
Detected in all
DPY19L3
ENSSSCG00000022521
ENSG00000178904
Dpy-19 like C-mannosyltransferase 3
Low tissue specificity
Detected in all
DPY19L4
ENSSSCG00000006098
ENSG00000156162
Dpy-19 like 4
Low tissue specificity
Detected in all
DPY30
ENSSSCG00000008516
ENSG00000162961
Protein dpy-30 homolog
Tissue enhanced
Detected in all
lens:
107.0
DPYD
ENSSSCG00000006878
ENSG00000188641
Dihydropyrimidine dehydrogenase
Tissue enhanced
Detected in all
kidney:
52.3
liver:
46.7
DPYSL2
ENSSSCG00000030130
ENSG00000092964
Dihydropyrimidinase like 2
Tissue enhanced
Detected in all
brain:
156.9
DPYSL3
ENSSSCG00000036549
ENSG00000113657
Dihydropyrimidinase like 3
Low tissue specificity
Detected in many
DQX1
ENSSSCG00000022614
ENSG00000144045
DEAQ-box RNA dependent ATPase 1
Group enriched
Detected in all
large intestine:
16.0
small intestine:
32.5
stomach:
14.0
DR1
ENSSSCG00000028310
ENSG00000117505
Down-regulator of transcription 1
Low tissue specificity
Detected in all
DRAM1
ENSSSCG00000023972
ENSG00000136048
DNA damage-regulated autophagy modulator protein 1
Tissue enhanced
Detected in many
ovary:
30.5
DRAM2
ENSSSCG00000026922
ENSG00000156171
DNA damage-regulated autophagy modulator protein 2
Low tissue specificity
Detected in all
DRAP1
ENSSSCG00000012965
ENSG00000175550
DR1 associated protein 1
Low tissue specificity
Detected in all
DRAXIN
ENSSSCG00000003423
ENSG00000162490
Dorsal inhibitory axon guidance protein
Tissue enhanced
Detected in all
brain:
16.5
DRC1
ENSSSCG00000008568
ENSG00000157856
Dynein regulatory complex subunit 1
Tissue enhanced
Detected in many
fallopian tube:
38.9
testis:
22.9
upper respiratory system:
25.4
DRC3
ENSSSCG00000037557
ENSG00000171962
Dynein regulatory complex subunit 3
Tissue enhanced
Detected in all
lung:
36.4
DRD2
ENSSSCG00000015048
ENSG00000149295
D(2) dopamine receptor
Tissue enhanced
Detected in many
brain:
56.0
pineal gland:
16.5
pituitary gland:
32.6
DRD3
ENSSSCG00000011911
ENSG00000151577
Dopamine receptor D3
Tissue enriched
Detected in some
brain:
26.2
DRG2
ENSSSCG00000036328
ENSG00000108591
Developmentally regulated GTP binding protein 2
Low tissue specificity
Detected in all
DRGX
ENSSSCG00000037404
ENSG00000165606
Dorsal root ganglia homeobox
Low tissue specificity
Detected in all
DROSHA
ENSSSCG00000016809
ENSG00000113360
Drosha ribonuclease III
Low tissue specificity
Detected in all
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