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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15957 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
MST1
ENSSSCG00000011386
ENSG00000173531
Macrophage stimulating 1
Group enriched
Detected in many
epididymis:
18.3
liver:
52.4
thyroid gland:
23.7
MST1R
ENSSSCG00000027992
ENSG00000164078
Macrophage stimulating 1 receptor
Tissue enhanced
Detected in many
skin:
31.4
stomach:
32.8
MSX1
ENSSSCG00000008727
ENSG00000163132
Homeobox protein MSX-1
Tissue enhanced
Detected in many
choroid plexus:
36.0
endometrium:
42.5
penis:
30.6
MT1A
ENSSSCG00000023684
Metallothionein-1A
Tissue enriched
Detected in all
liver:
134.9
MTA1
ENSSSCG00000032544
ENSG00000182979
Metastasis associated 1
Low tissue specificity
Detected in all
MTA2
ENSSSCG00000013062
ENSG00000149480
Metastasis associated 1 family member 2
Low tissue specificity
Detected in all
MTA3
ENSSSCG00000008464
ENSG00000057935
Metastasis associated 1 family member 3
Low tissue specificity
Detected in all
MTAP
ENSSSCG00000005135
ENSG00000099810
Methylthioadenosine phosphorylase
Low tissue specificity
Detected in all
MTBP
ENSSSCG00000005995
ENSG00000172167
MDM2 binding protein
Tissue enhanced
Detected in many
lymphoid tissue:
14.9
MTCH1
ENSSSCG00000001571
ENSG00000137409
Mitochondrial carrier homolog 1 isoform 1
Tissue enhanced
Detected in all
male glands:
141.8
MTCL1
ENSSSCG00000003684
ENSG00000168502
Microtubule crosslinking factor 1
Low tissue specificity
Detected in all
MTCP1
ENSSSCG00000012816
ENSG00000214827
Mature T cell proliferation 1
Low tissue specificity
Detected in all
MTDH
ENSSSCG00000006084
ENSG00000147649
Protein LYRIC
Low tissue specificity
Detected in all
MTERF1
ENSSSCG00000015309
ENSG00000127989
Mitochondrial transcription termination factor 1
Low tissue specificity
Detected in all
MTERF2
ENSSSCG00000039109
ENSG00000120832
Mitochondrial transcription termination factor 2
Low tissue specificity
Detected in all
MTERF3
ENSSSCG00000006090
ENSG00000156469
Mitochondrial transcription termination factor 3
Low tissue specificity
Detected in all
MTERF4
ENSSSCG00000016380
ENSG00000122085
Mitochondrial transcription termination factor 4
Low tissue specificity
Detected in all
MTF1
ENSSSCG00000037516
ENSG00000188786
Metal regulatory transcription factor 1
Low tissue specificity
Detected in all
MTF2
ENSSSCG00000006898
ENSG00000143033
Metal response element binding transcription factor 2
Tissue enriched
Detected in all
lymphoid tissue:
77.4
MTFMT
ENSSSCG00000004543
ENSG00000103707
Methionyl-tRNA formyltransferase, mitochondrial
Low tissue specificity
Detected in all
MTFP1
ENSSSCG00000010007
ENSG00000242114
Mitochondrial fission process 1
Low tissue specificity
Detected in all
MTFR1
ENSSSCG00000006219
ENSG00000066855
Mitochondrial fission regulator 1
Tissue enhanced
Detected in all
testis:
48.2
MTFR1L
ENSSSCG00000003553
ENSG00000117640
Mitochondrial fission regulator 1 like
Low tissue specificity
Detected in all
MTFR2
ENSSSCG00000004164
ENSG00000146410
Mitochondrial fission regulator 2
Low tissue specificity
Detected in all
MTG2
ENSSSCG00000037369
ENSG00000101181
Mitochondrial ribosome associated GTPase 2
Low tissue specificity
Detected in all
MTHFD1
ENSSSCG00000002269
ENSG00000100714
Methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1
Tissue enhanced
Detected in all
liver:
47.6
MTHFD1L
ENSSSCG00000004092
ENSG00000120254
Methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like
Tissue enhanced
Detected in many
epididymis:
39.7
lens:
35.0
MTHFD2
ENSSSCG00000008289
ENSG00000065911
Methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase
Tissue enhanced
Detected in all
male glands:
39.3
ovary:
29.7
MTHFD2L
ENSSSCG00000008961
ENSG00000163738
Methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like
Low tissue specificity
Detected in many
MTHFR
ENSSSCG00000003428
ENSG00000177000
Methylenetetrahydrofolate reductase
Tissue enriched
Detected in all
epididymis:
94.0
MTHFSD
ENSSSCG00000002660
ENSG00000103248
Methenyltetrahydrofolate synthetase domain containing
Low tissue specificity
Detected in all
MTIF2
ENSSSCG00000008404
ENSG00000085760
Mitochondrial translational initiation factor 2
Low tissue specificity
Detected in all
MTIF3
ENSSSCG00000037313
ENSG00000122033
Mitochondrial translational initiation factor 3
Low tissue specificity
Detected in all
MTM1
ENSSSCG00000012742
ENSG00000171100
Myotubularin 1
Low tissue specificity
Detected in all
MTMR1
ENSSSCG00000012743
ENSG00000063601
Myotubularin related protein 1
Low tissue specificity
Detected in all
MTMR10
ENSSSCG00000004844
ENSG00000166912
Myotubularin related protein 10
Low tissue specificity
Detected in all
MTMR11
ENSSSCG00000006664
ENSG00000014914
Myotubularin-related protein 11
Tissue enhanced
Detected in many
large intestine:
38.3
MTMR12
ENSSSCG00000031509
ENSG00000150712
Myotubularin related protein 12
Low tissue specificity
Detected in all
MTMR14
ENSSSCG00000011546
ENSG00000163719
Myotubularin related protein 14
Low tissue specificity
Detected in all
MTMR2
ENSSSCG00000014970
ENSG00000087053
Myotubularin related protein 2
Low tissue specificity
Detected in all
MTMR3
ENSSSCG00000009994
ENSG00000100330
Myotubularin related protein 3
Tissue enhanced
Detected in all
lens:
67.9
MTMR4
ENSSSCG00000017642
ENSG00000108389
Myotubularin related protein 4
Low tissue specificity
Detected in all
MTMR6
ENSSSCG00000035119
ENSG00000139505
Myotubularin related protein 6
Low tissue specificity
Detected in all
MTMR8
ENSSSCG00000023862
ENSG00000102043
Myotubularin related protein 8
Low tissue specificity
Detected in all
MTMR9
ENSSSCG00000035133
ENSG00000104643
Myotubularin related protein 9
Low tissue specificity
Detected in all
MTNR1A
ENSSSCG00000007002
ENSG00000168412
Melatonin receptor 1A
Tissue enriched
Detected in some
mesothelial tissue:
17.7
MTO1
ENSSSCG00000004487
ENSG00000135297
Mitochondrial tRNA translation optimization 1
Low tissue specificity
Detected in all
MTOR
ENSSSCG00000003413
ENSG00000198793
Mechanistic target of rapamycin kinase
Low tissue specificity
Detected in all
MTPAP
ENSSSCG00000011018
ENSG00000107951
Poly(A) RNA polymerase, mitochondrial
Low tissue specificity
Detected in all
MTPN
ENSSSCG00000039290
ENSG00000105887
Myotrophin
Tissue enhanced
Detected in all
lens:
94.6
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