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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15957 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
MRAP2
ENSSSCG00000026943
ENSG00000135324
Melanocortin 2 receptor accessory protein 2
Tissue enhanced
Detected in many
cervix:
61.1
endometrium:
22.3
male glands:
25.1
MRAS
ENSSSCG00000027443
ENSG00000158186
Muscle RAS oncogene homolog
Tissue enhanced
Detected in many
brain:
51.1
MRC1
ENSSSCG00000011038
ENSG00000260314
Macrophage mannose receptor 1 precursor
Tissue enhanced
Detected in many
liver:
26.3
synovial tissue:
36.3
MRC2
ENSSSCG00000017300
ENSG00000011028
Mannose receptor C type 2
Tissue enhanced
Detected in many
cartilage:
91.8
MRE11
ENSSSCG00000014955
ENSG00000020922
MRE11 homolog, double strand break repair nuclease
Low tissue specificity
Detected in all
MREG
ENSSSCG00000016175
ENSG00000118242
Melanoregulin
Tissue enhanced
Detected in many
brain:
23.1
cornea:
31.2
pineal gland:
20.2
MRGBP
ENSSSCG00000035353
ENSG00000101189
MRG domain binding protein
Tissue enriched
Detected in all
testis:
69.8
MRGPRF
ENSSSCG00000034441
ENSG00000172935
MAS related GPR family member F
Tissue enhanced
Detected in all
cervix:
49.6
smooth muscle:
55.1
MRI1
ENSSSCG00000013756
ENSG00000037757
Methylthioribose-1-phosphate isomerase 1
Low tissue specificity
Detected in all
MRM1
ENSSSCG00000017691
ENSG00000278619
RRNA methyltransferase 1, mitochondrial
Low tissue specificity
Detected in many
MRM2
ENSSSCG00000036247
ENSG00000122687
RRNA methyltransferase 2, mitochondrial
Low tissue specificity
Detected in all
MRM3
ENSSSCG00000017806
ENSG00000171861
Mitochondrial rRNA methyltransferase 3
Low tissue specificity
Detected in all
MRNIP
ENSSSCG00000014015
ENSG00000161010
MRN complex interacting protein
Low tissue specificity
Detected in all
MROH1
ENSSSCG00000005924
ENSG00000179832
Maestro heat like repeat family member 1
Low tissue specificity
Detected in all
MROH6
ENSSSCG00000006948
ENSG00000204839
Maestro heat like repeat family member 6
Tissue enhanced
Detected in many
mouth:
12.4
skin:
9.2
urinary bladder:
13.5
MRPL1
ENSSSCG00000008990
ENSG00000169288
Mitochondrial ribosomal protein L1
Low tissue specificity
Detected in all
MRPL10
ENSSSCG00000017519
ENSG00000159111
Mitochondrial ribosomal protein L10
Low tissue specificity
Detected in all
MRPL11
ENSSSCG00000012943
ENSG00000174547
Mitochondrial ribosomal protein L11
Low tissue specificity
Detected in all
MRPL12
ENSSSCG00000033148
ENSG00000262814
Mitochondrial ribosomal protein L12
Low tissue specificity
Detected in all
MRPL13
ENSSSCG00000005996
ENSG00000172172
39S ribosomal protein L13, mitochondrial
Low tissue specificity
Detected in all
MRPL16
ENSSSCG00000013118
ENSG00000166902
39S ribosomal protein L16, mitochondrial
Low tissue specificity
Detected in all
MRPL17
ENSSSCG00000024693
ENSG00000158042
39S ribosomal protein L17, mitochondrial
Low tissue specificity
Detected in all
MRPL18
ENSSSCG00000004047
ENSG00000112110
Mitochondrial ribosomal protein L18
Low tissue specificity
Detected in all
MRPL19
ENSSSCG00000021007
ENSG00000115364
Mitochondrial ribosomal protein L19
Low tissue specificity
Detected in all
MRPL2
ENSSSCG00000001658
ENSG00000112651
39S ribosomal protein L2, mitochondrial
Low tissue specificity
Detected in all
MRPL20
ENSSSCG00000033374
ENSG00000242485
Mitochondrial ribosomal protein L20
Low tissue specificity
Detected in all
MRPL21
ENSSSCG00000012879
ENSG00000197345
Mitochondrial ribosomal protein L21
Low tissue specificity
Detected in all
MRPL24
ENSSSCG00000006469
ENSG00000143314
39S ribosomal protein L24, mitochondrial
Low tissue specificity
Detected in all
MRPL27
ENSSSCG00000023783
ENSG00000108826
Mitochondrial ribosomal protein L27
Low tissue specificity
Detected in all
MRPL28
ENSSSCG00000007984
ENSG00000086504
Mitochondrial ribosomal protein L28
Low tissue specificity
Detected in all
MRPL3
ENSSSCG00000011179
ENSG00000114686
Mitochondrial ribosomal protein L3
Low tissue specificity
Detected in all
MRPL34
ENSSSCG00000039295
ENSG00000130312
Mitochondrial ribosomal protein L34
Low tissue specificity
Detected in all
MRPL35
ENSSSCG00000021746
ENSG00000132313
Mitochondrial ribosomal protein L35
Low tissue specificity
Detected in all
MRPL36
ENSSSCG00000040154
ENSG00000171421
Mitochondrial ribosomal protein L36
Low tissue specificity
Detected in all
MRPL37
ENSSSCG00000032083
ENSG00000116221
Mitochondrial ribosomal protein L37
Tissue enhanced
Detected in all
lens:
78.4
MRPL38
ENSSSCG00000017196
ENSG00000204316
Mitochondrial ribosomal protein L38
Low tissue specificity
Detected in all
MRPL39
ENSSSCG00000012021
ENSG00000154719
Mitochondrial ribosomal protein L39
Low tissue specificity
Detected in all
MRPL4
ENSSSCG00000013656
ENSG00000105364
Mitochondrial ribosomal protein L4
Low tissue specificity
Detected in all
MRPL40
ENSSSCG00000034014
ENSG00000185608
39S ribosomal protein L40, mitochondrial isoform 1
Low tissue specificity
Detected in all
MRPL41
ENSSSCG00000033694
ENSG00000182154
Mitochondrial ribosomal protein L41
Low tissue specificity
Detected in all
MRPL44
ENSSSCG00000016232
ENSG00000135900
39S ribosomal protein L44, mitochondrial
Low tissue specificity
Detected in all
MRPL46
ENSSSCG00000005105
ENSG00000259494
Mitochondrial ribosomal protein L46
Low tissue specificity
Detected in all
MRPL47
ENSSSCG00000011763
ENSG00000136522
Mitochondrial ribosomal protein L47
Low tissue specificity
Detected in all
MRPL48
ENSSSCG00000014829
ENSG00000175581
Mitochondrial ribosomal protein L48
Low tissue specificity
Detected in all
MRPL49
ENSSSCG00000013001
ENSG00000149792
39S ribosomal protein L49, mitochondrial
Low tissue specificity
Detected in all
MRPL51
ENSSSCG00000039662
ENSG00000111639
Mitochondrial ribosomal protein L51
Tissue enhanced
Detected in all
testis:
57.8
MRPL52
ENSSSCG00000002040
ENSG00000172590
39S ribosomal protein L52, mitochondrial
Low tissue specificity
Detected in all
MRPL55
ENSSSCG00000029050
ENSG00000162910
39S ribosomal protein L55, mitochondrial
Low tissue specificity
Detected in all
MRPL57
ENSSSCG00000031280
ENSG00000173141
Mitochondrial ribosomal protein L57
Tissue enhanced
Detected in all
male glands:
85.8
MRPL58
ENSSSCG00000034406
ENSG00000167862
Peptidyl-tRNA hydrolase ICT1, mitochondrial
Low tissue specificity
Detected in all
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