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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15957 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
MLH1
ENSSSCG00000024222
ENSG00000076242
DNA mismatch repair protein Mlh1
Low tissue specificity
Detected in all
MLH3
ENSSSCG00000002378
ENSG00000119684
MutL homolog 3
Low tissue specificity
Detected in all
MLIP
ENSSSCG00000001485
ENSG00000146147
Muscular LMNA interacting protein
Group enriched
Detected in some
heart:
106.4
skeletal muscle:
86.5
vagus nerve:
48.5
MLKL
ENSSSCG00000002716
ENSG00000168404
Mixed lineage kinase domain like pseudokinase
Low tissue specificity
Detected in all
MLLT1
ENSSSCG00000013534
ENSG00000130382
MLLT1, super elongation complex subunit
Low tissue specificity
Detected in all
MLLT10
ENSSSCG00000011085
ENSG00000078403
MLLT10, histone lysine methyltransferase DOT1L cofactor
Low tissue specificity
Detected in all
MLLT3
ENSSSCG00000005166
ENSG00000171843
MLLT3, super elongation complex subunit
Low tissue specificity
Detected in many
MLLT6
ENSSSCG00000032478
ENSG00000275023
MLLT6, PHD finger containing
Low tissue specificity
Detected in all
MLNR
ENSSSCG00000022064
ENSG00000102539
Motilin receptor
Low tissue specificity
Detected in many
MLPH
ENSSSCG00000032849
ENSG00000115648
Melanophilin
Tissue enhanced
Detected in many
esophagus:
60.9
male glands:
95.7
salivary gland:
81.4
stomach:
67.7
MLST8
ENSSSCG00000008044
ENSG00000167965
MTOR associated protein, LST8 homolog
Low tissue specificity
Detected in all
MLX
ENSSSCG00000017397
ENSG00000108788
MLX, MAX dimerization protein
Low tissue specificity
Detected in all
MLXIP
ENSSSCG00000009794
ENSG00000175727
MLX interacting protein
Low tissue specificity
Detected in all
MLXIPL
ENSSSCG00000007710
ENSG00000009950
MLX interacting protein like
Tissue enhanced
Detected in many
adipose tissue:
74.7
liver:
76.6
MMAA
ENSSSCG00000009039
ENSG00000151611
Methylmalonic aciduria (cobalamin deficiency) cblA type
Low tissue specificity
Detected in all
MMAB
ENSSSCG00000009932
ENSG00000139428
Methylmalonic aciduria (cobalamin deficiency) cblB type
Low tissue specificity
Detected in all
MMACHC
ENSSSCG00000037354
ENSG00000132763
Methylmalonic aciduria and homocystinuria type C protein
Low tissue specificity
Detected in all
MMADHC
ENSSSCG00000028646
ENSG00000168288
Methylmalonic aciduria and homocystinuria, cblD type
Tissue enhanced
Detected in all
lens:
37.7
MMD
ENSSSCG00000017605
ENSG00000108960
Monocyte to macrophage differentiation associated
Tissue enhanced
Detected in all
ovary:
43.0
MME
ENSSSCG00000011723
ENSG00000196549
Membrane metalloendopeptidase
Tissue enhanced
Detected in many
choroid plexus:
43.9
endometrium:
40.3
kidney:
60.8
ovary:
39.6
MMGT1
ENSSSCG00000025854
ENSG00000169446
Membrane magnesium transporter 1 precursor
Low tissue specificity
Detected in all
MMP11
ENSSSCG00000010071
ENSG00000099953
Matrix metallopeptidase 11
Low tissue specificity
Detected in all
MMP14
ENSSSCG00000002039
ENSG00000157227
Matrix metallopeptidase 14
Tissue enhanced
Detected in all
cervix:
107.7
ovary:
96.3
MMP15
ENSSSCG00000002806
ENSG00000102996
Matrix metallopeptidase 15
Tissue enhanced
Detected in all
stomach:
61.4
MMP16
ENSSSCG00000006132
ENSG00000156103
Matrix metallopeptidase 16
Tissue enhanced
Detected in many
cartilage:
46.5
MMP19
ENSSSCG00000000368
ENSG00000123342
Matrix metallopeptidase 19
Tissue enhanced
Detected in many
liver:
39.5
ovary:
32.3
MMP2
ENSSSCG00000002829
ENSG00000087245
72 kDa type IV collagenase precursor
Tissue enhanced
Detected in all
cervix:
147.1
MMP23B
ENSSSCG00000003351
ENSG00000189409
Matrix metallopeptidase 23B
Tissue enhanced
Detected in many
cartilage:
53.6
MMP24
ENSSSCG00000040160
ENSG00000125966
Matrix metallopeptidase 24
Tissue enhanced
Detected in all
adrenal gland:
36.5
brain:
39.8
MMP25
ENSSSCG00000021569
ENSG00000008516
Matrix metallopeptidase 25
Tissue enhanced
Detected in many
lymphoid tissue:
20.0
stomach:
24.4
MMP27
ENSSSCG00000014984
ENSG00000137675
Matrix metallopeptidase 27
Group enriched
Detected in some
adipose tissue:
14.1
cartilage:
7.3
mouth:
24.1
skin:
14.9
MMP28
ENSSSCG00000034440
ENSG00000271447
Matrix metallopeptidase 28
Tissue enhanced
Detected in many
penis:
38.4
MMP3
ENSSSCG00000014985
ENSG00000149968
Interstitial collagenase 18 kDa interstitial collagenase
Tissue enhanced
Detected in many
small intestine:
36.8
upper respiratory system:
34.7
urinary bladder:
43.0
MMP9
ENSSSCG00000007436
ENSG00000100985
Matrix metalloproteinase-9 precursor
Tissue enriched
Detected in many
dura mater:
85.1
MMRN1
ENSSSCG00000009202
ENSG00000138722
Multimerin 1
Tissue enhanced
Detected in many
ovary:
21.2
MMRN2
ENSSSCG00000024048
ENSG00000173269
Multimerin 2
Tissue enhanced
Detected in many
penis:
56.2
MMS19
ENSSSCG00000010520
ENSG00000155229
MMS19 homolog, cytosolic iron-sulfur assembly component
Low tissue specificity
Detected in all
MMS22L
ENSSSCG00000004344
ENSG00000146263
MMS22 like, DNA repair protein
Tissue enhanced
Detected in many
lymphoid tissue:
16.1
MN1
ENSSSCG00000009966
ENSG00000169184
MN1 proto-oncogene, transcriptional regulator
Tissue enhanced
Detected in many
cartilage:
60.6
skeletal muscle:
49.1
MNAT1
ENSSSCG00000005090
ENSG00000020426
CDK-activating kinase assembly factor MAT1
Low tissue specificity
Detected in all
MND1
ENSSSCG00000009009
ENSG00000121211
Meiotic nuclear divisions 1
Tissue enhanced
Detected in many
lymphoid tissue:
17.8
MNDA
ENSSSCG00000037532
ENSG00000163563
Myeloid cell nuclear differentiation antigen
Low tissue specificity
Detected in all
MNS1
ENSSSCG00000004601
ENSG00000138587
Meiosis specific nuclear structural 1
Tissue enhanced
Detected in many
choroid plexus:
18.3
fallopian tube:
20.6
testis:
20.3
MNT
ENSSSCG00000037159
ENSG00000070444
MAX network transcriptional repressor
Low tissue specificity
Detected in all
MOB1A
ENSSSCG00000039221
ENSG00000114978
MOB kinase activator 1A
Low tissue specificity
Detected in all
MOB2
ENSSSCG00000037847
ENSG00000182208
MOB kinase activator 2
Low tissue specificity
Detected in all
MOB3A
ENSSSCG00000032366
ENSG00000172081
MOB kinase activator 3A
Low tissue specificity
Detected in all
MOB3C
ENSSSCG00000003897
ENSG00000142961
MOB kinase activator 3C
Low tissue specificity
Detected in many
MOBKL3
ENSSSCG00000016079
Mps one binder kinase activator-like 3
Low tissue specificity
Detected in all
MOCOS
ENSSSCG00000003744
ENSG00000075643
Molybdenum cofactor sulfurase
Tissue enhanced
Detected in all
epididymis:
29.0
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