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Keyword
Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15957 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
MEX3B
ENSSSCG00000038491
ENSG00000183496
Mex-3 RNA binding family member B
Tissue enhanced
Detected in all
testis:
24.4
MEX3C
ENSSSCG00000034427
ENSG00000176624
Mex-3 RNA binding family member C
Tissue enhanced
Detected in all
testis:
57.0
MEX3D
ENSSSCG00000021750
ENSG00000181588
Mex-3 RNA binding family member D
Tissue enriched
Detected in all
testis:
69.4
MFAP1
ENSSSCG00000040383
ENSG00000140259
Microfibril associated protein 1
Low tissue specificity
Detected in all
MFAP2
ENSSSCG00000003479
ENSG00000117122
Microfibril associated protein 2
Tissue enhanced
Detected in many
cartilage:
44.7
MFAP3
ENSSSCG00000034706
ENSG00000037749
Microfibril associated protein 3
Low tissue specificity
Detected in all
MFAP3L
ENSSSCG00000009709
ENSG00000198948
Microfibril associated protein 3 like
Tissue enhanced
Detected in many
brain:
24.9
kidney:
38.9
skin:
23.6
MFAP4
ENSSSCG00000036007
ENSG00000166482
Microfibril associated protein 4
Low tissue specificity
Detected in many
MFAP5
ENSSSCG00000031712
ENSG00000197614
Microfibrillar-associated protein 5 precursor
Low tissue specificity
Detected in all
MFF
ENSSSCG00000031572
Mitochondrial fission factor
Low tissue specificity
Detected in all
MFGE8
ENSSSCG00000001834
ENSG00000140545
Lactadherin precursor
Tissue enriched
Detected in many
cartilage:
239.5
MFHAS1
ENSSSCG00000035366
ENSG00000147324
Malignant fibrous histiocytoma amplified sequence 1
Low tissue specificity
Detected in all
MFN1
ENSSSCG00000039285
ENSG00000171109
Mitofusin-1
Low tissue specificity
Detected in all
MFN2
ENSSSCG00000003434
ENSG00000116688
Mitofusin 2
Tissue enhanced
Detected in all
heart:
59.5
MFNG
ENSSSCG00000030209
ENSG00000100060
MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
Tissue enhanced
Detected in many
adipose tissue:
55.4
aorta:
31.5
MFSD1
ENSSSCG00000026018
ENSG00000118855
Major facilitator superfamily domain containing 1
Low tissue specificity
Detected in all
MFSD10
ENSSSCG00000008695
ENSG00000109736
Major facilitator superfamily domain containing 10
Low tissue specificity
Detected in all
MFSD11
ENSSSCG00000029343
ENSG00000092931
Major facilitator superfamily domain containing 11
Low tissue specificity
Detected in all
MFSD12
ENSSSCG00000026169
ENSG00000161091
Major facilitator superfamily domain containing 12
Low tissue specificity
Detected in all
MFSD13A
ENSSSCG00000010584
ENSG00000138111
Major facilitator superfamily domain containing 13A
Low tissue specificity
Detected in all
MFSD14B
ENSSSCG00000026552
ENSG00000148110
Hippocampus abundant transcript-like protein 1
Low tissue specificity
Detected in all
MFSD2A
ENSSSCG00000003669
ENSG00000168389
Major facilitator superfamily domain containing 2A
Low tissue specificity
Detected in all
MFSD2B
ENSSSCG00000008590
ENSG00000205639
Major facilitator superfamily domain containing 2B
Low tissue specificity
Detected in all
MFSD3
ENSSSCG00000005899
ENSG00000167700
Major facilitator superfamily domain containing 3
Low tissue specificity
Detected in all
MFSD4A
ENSSSCG00000021487
ENSG00000174514
Major facilitator superfamily domain containing 4A
Tissue enhanced
Detected in many
male glands:
45.0
salivary gland:
44.8
MFSD4B
ENSSSCG00000004419
ENSG00000173214
Major facilitator superfamily domain containing 4B
Tissue enhanced
Detected in all
skeletal muscle:
41.0
MFSD5
ENSSSCG00000000264
ENSG00000182544
Major facilitator superfamily domain containing 5
Low tissue specificity
Detected in all
MFSD6
ENSSSCG00000016052
ENSG00000151690
Major facilitator superfamily domain-containing protein 6
Tissue enhanced
Detected in all
male glands:
49.0
MFSD8
ENSSSCG00000009075
ENSG00000164073
Major facilitator superfamily domain containing 8
Low tissue specificity
Detected in all
MFSD9
ENSSSCG00000038714
ENSG00000135953
Major facilitator superfamily domain containing 9
Low tissue specificity
Detected in all
MGA
ENSSSCG00000004739
ENSG00000174197
MGA, MAX dimerization protein
Low tissue specificity
Detected in all
MGAM2
ENSSSCG00000016487
ENSG00000257743
Maltase-glucoamylase 2 (putative)
Group enriched
Detected in many
large intestine:
42.9
small intestine:
31.3
upper respiratory system:
32.8
MGAT1
ENSSSCG00000014538
ENSG00000131446
Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase
Low tissue specificity
Detected in all
MGAT3
ENSSSCG00000038126
ENSG00000128268
Mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase
Tissue enhanced
Detected in many
stomach:
23.8
vagus nerve:
33.5
MGAT4A
ENSSSCG00000008188
ENSG00000071073
Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A
Low tissue specificity
Detected in all
MGAT4B
ENSSSCG00000014017
ENSG00000161013
Mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme B
Tissue enhanced
Detected in all
stomach:
61.2
MGAT5
ENSSSCG00000015701
ENSG00000152127
Mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase
Tissue enhanced
Detected in all
male glands:
101.7
MGEA5
ENSSSCG00000010569
ENSG00000198408
Meningioma expressed antigen 5 (hyaluronidase)
Low tissue specificity
Detected in all
MGLL
ENSSSCG00000024134
ENSG00000074416
Monoglyceride lipase
Tissue enhanced
Detected in many
adipose tissue:
69.3
lens:
80.5
MGMT
ENSSSCG00000010756
ENSG00000170430
O-6-methylguanine-DNA methyltransferase
Low tissue specificity
Detected in all
MGP
ENSSSCG00000037697
ENSG00000111341
Matrix Gla protein
Tissue enhanced
Detected in many
aorta:
118.7
dura mater:
144.7
mesothelial tissue:
126.3
MGRN1
ENSSSCG00000007930
ENSG00000102858
Mahogunin ring finger 1
Low tissue specificity
Detected in all
MGST1
ENSSSCG00000032580
ENSG00000008394
Microsomal glutathione S-transferase 1
Tissue enhanced
Detected in all
liver:
129.2
thyroid gland:
154.6
MGST2
ENSSSCG00000031736
ENSG00000085871
Microsomal glutathione S-transferase 2
Tissue enhanced
Detected in many
large intestine:
13.3
MGST3
ENSSSCG00000006325
ENSG00000143198
Microsomal glutathione S-transferase 3
Low tissue specificity
Detected in all
MIA3
ENSSSCG00000010834
ENSG00000154305
MIA family member 3, ER export factor
Tissue enhanced
Detected in all
male glands:
108.1
MIB1
ENSSSCG00000025478
ENSG00000101752
Mindbomb E3 ubiquitin protein ligase 1
Low tissue specificity
Detected in all
MIB2
ENSSSCG00000003350
ENSG00000197530
Mindbomb E3 ubiquitin protein ligase 2
Low tissue specificity
Detected in all
MICAL1
ENSSSCG00000004412
ENSG00000135596
Microtubule associated monooxygenase, calponin and LIM domain containing 1
Tissue enhanced
Detected in all
lymphoid tissue:
48.5
MICAL2
ENSSSCG00000013400
ENSG00000133816
Microtubule associated monooxygenase, calponin and LIM domain containing 2
Tissue enhanced
Detected in all
heart:
56.7
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