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Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
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Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
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Heart
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Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15957 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
AP2M1
ENSSSCG00000024437
ENSG00000161203
AP-2 complex subunit mu
Low tissue specificity
Detected in all
AP2S1
ENSSSCG00000003106
ENSG00000042753
AP-2 complex subunit sigma isoform 2
Low tissue specificity
Detected in all
AP3B1
ENSSSCG00000014101
ENSG00000132842
AP-3 complex subunit beta-1
Low tissue specificity
Detected in all
AP3B2
ENSSSCG00000001807
ENSG00000103723
Adaptor related protein complex 3 beta 2 subunit
Tissue enhanced
Detected in many
brain:
22.5
pineal gland:
16.2
retina:
13.5
AP3M1
ENSSSCG00000010314
ENSG00000185009
AP-3 complex subunit mu-1
Low tissue specificity
Detected in all
AP3M2
ENSSSCG00000007033
ENSG00000070718
Adaptor related protein complex 3 mu 2 subunit
Tissue enhanced
Detected in all
brain:
20.1
pineal gland:
17.5
AP3S1
ENSSSCG00000037595
ENSG00000177879
Adaptor related protein complex 3 sigma 1 subunit
Low tissue specificity
Detected in all
AP3S2
ENSSSCG00000030174
ENSG00000157823
AP-3 complex subunit sigma-2
Tissue enhanced
Detected in all
lens:
67.4
AP4B1
ENSSSCG00000006762
ENSG00000134262
Adaptor related protein complex 4 beta 1 subunit
Low tissue specificity
Detected in all
AP4E1
ENSSSCG00000004634
ENSG00000081014
Adaptor related protein complex 4 epsilon 1 subunit
Low tissue specificity
Detected in all
AP4M1
ENSSSCG00000034288
ENSG00000221838
Adaptor related protein complex 4 mu 1 subunit
Low tissue specificity
Detected in all
AP4S1
ENSSSCG00000001972
ENSG00000100478
AP-4 complex subunit sigma-1
Low tissue specificity
Detected in all
AP5B1
ENSSSCG00000012978
ENSG00000254470
Adaptor related protein complex 5 beta 1 subunit
Low tissue specificity
Detected in all
AP5M1
ENSSSCG00000005065
ENSG00000053770
Adaptor related protein complex 5 mu 1 subunit
Low tissue specificity
Detected in all
AP5S1
ENSSSCG00000033297
ENSG00000125843
Adaptor related protein complex 5 sigma 1 subunit
Low tissue specificity
Detected in all
AP5Z1
ENSSSCG00000007577
ENSG00000242802
AP-5 complex subunit zeta-1
Low tissue specificity
Detected in all
APAF1
ENSSSCG00000000884
ENSG00000120868
Apoptotic peptidase activating factor 1
Low tissue specificity
Detected in all
APBA1
ENSSSCG00000005250
ENSG00000107282
Amyloid beta precursor protein binding family A member 1
Tissue enhanced
Detected in many
brain:
24.6
lens:
25.4
APBA3
ENSSSCG00000013492
ENSG00000011132
Amyloid beta precursor protein binding family A member 3
Tissue enriched
Detected in all
lens:
86.9
APBB1
ENSSSCG00000014628
ENSG00000166313
Amyloid beta precursor protein binding family B member 1
Tissue enhanced
Detected in many
brain:
43.3
lens:
26.2
APBB1IP
ENSSSCG00000030156
ENSG00000077420
Amyloid beta precursor protein binding family B member 1 interacting protein
Tissue enriched
Detected in many
lymphoid tissue:
75.5
APBB2
ENSSSCG00000022168
ENSG00000163697
Amyloid beta precursor protein binding family B member 2
Tissue enhanced
Detected in all
kidney:
79.7
APBB3
ENSSSCG00000014366
ENSG00000113108
Amyloid beta precursor protein binding family B member 3
Low tissue specificity
Detected in all
APC
ENSSSCG00000014207
ENSG00000134982
Adenomatous polyposis coli protein
Tissue enhanced
Detected in all
brain:
50.8
APC2
ENSSSCG00000023329
ENSG00000115266
Adenomatous polyposis coli protein 2
Tissue enhanced
Detected in many
brain:
23.0
APCDD1
ENSSSCG00000039797
ENSG00000154856
APC down-regulated 1
Tissue enhanced
Detected in all
epididymis:
55.5
APCDD1L
ENSSSCG00000007515
ENSG00000198768
APC down-regulated 1 like
Tissue enhanced
Detected in many
cartilage:
12.7
dura mater:
18.2
APEH
ENSSSCG00000011385
ENSG00000164062
Acylamino-acid-releasing enzyme
Tissue enhanced
Detected in all
epididymis:
63.2
APELA
ENSSSCG00000031750
ENSG00000248329
Apelin receptor early endogenous ligand
Tissue enhanced
Detected in many
brain:
45.9
kidney:
46.6
APH1A
ENSSSCG00000028297
ENSG00000117362
Gamma-secretase subunit APH-1A
Low tissue specificity
Detected in all
API5
ENSSSCG00000013285
ENSG00000166181
Apoptosis inhibitor 5
Low tissue specificity
Detected in all
APIP
ENSSSCG00000013299
ENSG00000149089
APAF1 interacting protein
Tissue enhanced
Detected in all
male glands:
73.4
APLF
ENSSSCG00000008346
ENSG00000169621
Aprataxin and PNKP like factor
Low tissue specificity
Detected in all
APLN
ENSSSCG00000030843
ENSG00000171388
Apelin
Tissue enhanced
Detected in many
bone marrow:
26.1
brain:
80.8
APLNR
ENSSSCG00000038869
ENSG00000134817
Apelin receptor
Tissue enhanced
Detected in many
brain:
56.9
APLP1
ENSSSCG00000002916
ENSG00000105290
Amyloid beta precursor like protein 1
Group enriched
Detected in many
brain:
164.7
pituitary gland:
53.6
APLP2
ENSSSCG00000015244
ENSG00000084234
Amyloid beta precursor like protein 2
Low tissue specificity
Detected in all
APMAP
ENSSSCG00000036286
ENSG00000101474
Adipocyte plasma membrane associated protein
Low tissue specificity
Detected in all
APOA1
ENSSSCG00000030921
ENSG00000118137
Apolipoprotein A-I preproprotein
Group enriched
Detected in many
liver:
330.7
vagus nerve:
134.4
APOA4
ENSSSCG00000040689
ENSG00000110244
Apolipoprotein A-IV precursor
Group enriched
Detected in all
liver:
51.3
small intestine:
35.0
APOBEC2
ENSSSCG00000036018
ENSG00000124701
Apolipoprotein B mRNA editing enzyme catalytic subunit 2
Tissue enhanced
Detected in all
heart:
33.8
skeletal muscle:
76.2
APOBEC3B
ENSSSCG00000000091
ENSG00000100298
DNA dC->dU-editing enzyme APOBEC-3B
Tissue enhanced
Detected in all
lymphoid tissue:
44.2
APOC4
ENSSSCG00000031646
Apolipoprotein C-IV precursor
Tissue enriched
Detected in all
liver:
97.0
APOD
ENSSSCG00000011831
ENSG00000189058
Apolipoprotein D
Group enriched
Detected in many
brain:
308.3
cornea:
375.9
vagus nerve:
117.2
APOE
ENSSSCG00000003088
ENSG00000130203
Apolipoprotein E precursor
Tissue enriched
Detected in many
liver:
755.1
APOLD1
ENSSSCG00000036787
ENSG00000178878
Apolipoprotein L domain containing 1
Tissue enhanced
Detected in many
aorta:
38.5
bone marrow:
40.5
cartilage:
43.0
APOM
ENSSSCG00000001411
ENSG00000204444
Apolipoprotein M
Tissue enhanced
Detected in all
liver:
40.1
APP
ENSSSCG00000012022
ENSG00000142192
Amyloid-beta A4 protein N-APP Soluble APP-alpha Soluble APP-beta C99 Amyloid-beta protein 42 amyloid-beta protein 40 C83 P3(42) P3(40) C80 Gamma-secretase C-terminal fragment 59 Gamma-secretase C-terminal fragment 57 Gamma-secretase C-terminal fragment 50 C31
Low tissue specificity
Detected in all
APPBP2
ENSSSCG00000017678
ENSG00000062725
Amyloid beta precursor protein binding protein 2
Low tissue specificity
Detected in all
APPL1
ENSSSCG00000032357
ENSG00000157500
DCC-interacting protein 13-alpha
Low tissue specificity
Detected in all
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