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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15957 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
MACF1
ENSSSCG00000003654
ENSG00000127603
Microtubule-actin crosslinking factor 1
Low tissue specificity
Detected in all
MACO1
ENSSSCG00000030682
ENSG00000204178
Macoilin
Low tissue specificity
Detected in all
MACROD1
ENSSSCG00000013043
ENSG00000133315
O-acetyl-ADP-ribose deacetylase MACROD1
Group enriched
Detected in many
heart:
46.2
skeletal muscle:
149.0
MAD1L1
ENSSSCG00000038766
ENSG00000002822
Mitotic arrest deficient 1 like 1
Low tissue specificity
Detected in all
MAD2L1
ENSSSCG00000036256
ENSG00000164109
Mitotic arrest deficient 2 like 1
Low tissue specificity
Detected in all
MAD2L1BP
ENSSSCG00000016346
ENSG00000124688
MAD2L1 binding protein
Low tissue specificity
Detected in all
MAD2L2
ENSSSCG00000003419
ENSG00000116670
Mitotic arrest deficient 2 like 2
Tissue enhanced
Detected in all
testis:
102.4
MADD
ENSSSCG00000013235
ENSG00000110514
MAP kinase activating death domain
Low tissue specificity
Detected in all
MAEA
ENSSSCG00000032304
ENSG00000090316
Macrophage erythroblast attacher
Low tissue specificity
Detected in all
MAF
ENSSSCG00000040607
ENSG00000178573
MAF bZIP transcription factor
Tissue enhanced
Detected in all
lens:
134.2
MAF1
ENSSSCG00000005915
ENSG00000179632
MAF1 homolog, negative regulator of RNA polymerase III
Low tissue specificity
Detected in all
MAFA
ENSSSCG00000034820
ENSG00000182759
MAF bZIP transcription factor A
Tissue enhanced
Detected in many
heart:
9.6
skeletal muscle:
33.0
MAFB
ENSSSCG00000032251
ENSG00000204103
MAF bZIP transcription factor B
Tissue enhanced
Detected in many
lymphoid tissue:
125.0
synovial tissue:
119.6
MAFF
ENSSSCG00000030165
ENSG00000185022
MAF bZIP transcription factor F
Tissue enhanced
Detected in many
aorta:
49.2
cartilage:
42.5
mesothelial tissue:
59.5
MAFG
ENSSSCG00000035253
ENSG00000197063
MAF bZIP transcription factor G
Tissue enhanced
Detected in all
lens:
47.7
MAFK
ENSSSCG00000007559
ENSG00000198517
MAF bZIP transcription factor K
Low tissue specificity
Detected in all
MAGED1
ENSSSCG00000012318
ENSG00000179222
Melanoma-associated antigen D1
Low tissue specificity
Detected in all
MAGEF1
ENSSSCG00000011787
ENSG00000177383
MAGE family member F1
Low tissue specificity
Detected in all
MAGEL2
ENSSSCG00000004835
ENSG00000254585
MAGE family member L2
Tissue enhanced
Detected in many
brain:
19.3
pituitary gland:
9.7
MAGI1
ENSSSCG00000011497
ENSG00000151276
Membrane associated guanylate kinase, WW and PDZ domain containing 1
Low tissue specificity
Detected in all
MAGI2
ENSSSCG00000031780
ENSG00000187391
Membrane associated guanylate kinase, WW and PDZ domain containing 2
Tissue enhanced
Detected in many
brain:
31.7
lens:
39.6
MAGI3
ENSSSCG00000006767
ENSG00000081026
Membrane associated guanylate kinase, WW and PDZ domain containing 3
Low tissue specificity
Detected in all
MAGIX
ENSSSCG00000012295
ENSG00000269313
MAGI family member, X-linked
Low tissue specificity
Detected in all
MAGT1
ENSSSCG00000012435
ENSG00000102158
Magnesium transporter 1
Low tissue specificity
Detected in all
MAIP1
ENSSSCG00000036676
ENSG00000162972
Matrix AAA peptidase interacting protein 1
Low tissue specificity
Detected in all
MAK
ENSSSCG00000001042
ENSG00000111837
Male germ cell associated kinase
Tissue enhanced
Detected in many
retina:
90.6
testis:
31.4
MAK16
ENSSSCG00000036947
ENSG00000198042
Protein MAK16 homolog
Low tissue specificity
Detected in all
MAL2
ENSSSCG00000006003
ENSG00000147676
Protein MAL2
Tissue enhanced
Detected in many
brain:
38.7
MALRD1
ENSSSCG00000040615
ENSG00000204740
MAM and LDL receptor class A domain containing 1
Group enriched
Detected in many
choroid plexus:
59.1
small intestine:
38.3
MALSU1
ENSSSCG00000036722
ENSG00000156928
Mitochondrial assembly of ribosomal large subunit 1
Low tissue specificity
Detected in all
MALT1
ENSSSCG00000004917
ENSG00000172175
MALT1 paracaspase
Low tissue specificity
Detected in all
MAMDC2
ENSSSCG00000030655
ENSG00000165072
MAM domain-containing protein 2
Tissue enhanced
Detected in many
smooth muscle:
34.5
MAMDC4
ENSSSCG00000005832
ENSG00000177943
MAM domain containing 4
Low tissue specificity
Detected in all
MAML1
ENSSSCG00000014019
ENSG00000161021
Mastermind like transcriptional coactivator 1
Low tissue specificity
Detected in all
MAML2
ENSSSCG00000034879
ENSG00000184384
Mastermind like transcriptional coactivator 2
Low tissue specificity
Detected in all
MAMLD1
ENSSSCG00000012741
ENSG00000013619
Mastermind like domain containing 1
Tissue enhanced
Detected in many
epididymis:
55.4
MAMSTR
ENSSSCG00000003143
ENSG00000176909
MEF2 activating motif and SAP domain containing transcriptional regulator
Tissue enhanced
Detected in all
skeletal muscle:
44.9
MAN1A1
ENSSSCG00000004244
ENSG00000111885
Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA
Tissue enhanced
Detected in many
choroid plexus:
46.4
MAN1A2
ENSSSCG00000006730
ENSG00000198162
Mannosidase alpha class 1A member 2
Low tissue specificity
Detected in all
MAN1C1
ENSSSCG00000023235
ENSG00000117643
Mannosidase alpha class 1C member 1
Tissue enhanced
Detected in all
liver:
46.0
ovary:
66.6
MAN2A1
ENSSSCG00000014195
ENSG00000112893
Mannosidase alpha class 2A member 1
Low tissue specificity
Detected in all
MAN2A2
ENSSSCG00000001819
ENSG00000196547
Mannosidase alpha class 2A member 2
Low tissue specificity
Detected in all
MAN2C1
ENSSSCG00000001881
ENSG00000140400
Mannosidase alpha class 2C member 1
Low tissue specificity
Detected in all
MANBA
ENSSSCG00000009166
ENSG00000109323
Mannosidase beta
Low tissue specificity
Detected in all
MANEA
ENSSSCG00000035648
ENSG00000172469
Mannosidase endo-alpha
Low tissue specificity
Detected in all
MANEAL
ENSSSCG00000032960
ENSG00000185090
Mannosidase endo-alpha like
Tissue enhanced
Detected in many
brain:
19.1
lens:
30.3
MANF
ENSSSCG00000032914
ENSG00000145050
Mesencephalic astrocyte-derived neurotrophic factor precursor
Low tissue specificity
Detected in all
MANSC1
ENSSSCG00000040835
ENSG00000111261
MANSC domain containing 1
Tissue enhanced
Detected in all
male glands:
78.7
MANSC4
ENSSSCG00000000546
ENSG00000205693
MANSC domain containing 4
Low tissue specificity
Detected in all
MAOA
ENSSSCG00000012257
ENSG00000189221
Amine oxidase
Low tissue specificity
Detected in many
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