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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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16894 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
DCUN1D3
ENSSSCG00000007854
ENSG00000188215
Defective in cullin neddylation 1 domain containing 3
Low tissue specificity
Detected in all
DCUN1D4
ENSSSCG00000008831
ENSG00000109184
Defective in cullin neddylation 1 domain containing 4
Tissue enhanced
Detected in all
brain:
28.6
DCUN1D5
ENSSSCG00000014989
ENSG00000137692
Defective in cullin neddylation 1 domain containing 5
Low tissue specificity
Detected in all
DCX
ENSSSCG00000012585
ENSG00000077279
Doublecortin
Group enriched
Detected in many
brain:
47.7
cartilage:
36.4
DCXR
ENSSSCG00000039873
ENSG00000169738
Dicarbonyl and L-xylulose reductase
Tissue enhanced
Detected in all
thyroid gland:
93.7
DDA1
ENSSSCG00000031251
ENSG00000130311
DET1 and DDB1 associated 1
Low tissue specificity
Detected in all
DDAH1
ENSSSCG00000040735
ENSG00000153904
Dimethylarginine dimethylaminohydrolase 1
Tissue enhanced
Detected in many
brain:
48.9
kidney:
54.5
DDAH2
ENSSSCG00000038514
ENSG00000213722
Dimethylarginine dimethylaminohydrolase 2
Low tissue specificity
Detected in all
DDB1
ENSSSCG00000013094
ENSG00000167986
Damage specific DNA binding protein 1
Low tissue specificity
Detected in all
DDB2
ENSSSCG00000013243
ENSG00000134574
Damage specific DNA binding protein 2
Group enriched
Detected in all
cornea:
24.7
lens:
97.1
DDC
ENSSSCG00000022009
ENSG00000132437
Dopa decarboxylase
Group enriched
Detected in some
brain:
23.8
kidney:
83.0
pineal gland:
80.8
DDHD1
ENSSSCG00000005043
ENSG00000100523
DDHD domain containing 1
Tissue enhanced
Detected in all
male glands:
62.1
DDHD2
ENSSSCG00000015818
ENSG00000085788
DDHD domain containing 2
Tissue enhanced
Detected in all
brain:
52.4
DDI1
ENSSSCG00000014995
ENSG00000170967
DNA damage inducible 1 homolog 1
Tissue enriched
Detected in many
testis:
57.0
DDIAS
ENSSSCG00000014898
ENSG00000165490
DNA damage induced apoptosis suppressor
Low tissue specificity
Detected in all
DDIT3
ENSSSCG00000040751
ENSG00000175197
DNA damage-inducible transcript 3 protein
Low tissue specificity
Detected in all
DDIT4
ENSSSCG00000031888
ENSG00000168209
DNA damage-inducible transcript 4 protein
Tissue enriched
Detected in all
cartilage:
191.5
DDIT4L
ENSSSCG00000025240
ENSG00000145358
DNA damage inducible transcript 4 like
Tissue enhanced
Detected in many
choroid plexus:
36.4
heart:
41.4
mesothelial tissue:
47.4
skeletal muscle:
43.1
DDO
ENSSSCG00000004401
ENSG00000203797
D-aspartate oxidase
Tissue enhanced
Detected in many
heart:
22.1
kidney:
22.5
male glands:
19.9
DDOST
ENSSSCG00000003505
ENSG00000244038
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit precursor
Low tissue specificity
Detected in all
DDR1
ENSSSCG00000001382
ENSG00000204580
Epithelial discoidin domain-containing receptor 1 precursor
Low tissue specificity
Detected in all
DDR2
ENSSSCG00000006338
ENSG00000162733
Discoidin domain receptor tyrosine kinase 2
Tissue enhanced
Detected in many
cartilage:
103.4
cervix:
79.1
DDRGK1
ENSSSCG00000007160
ENSG00000198171
DDRGK domain-containing protein 1
Low tissue specificity
Detected in all
DDT
ENSSSCG00000035836
ENSG00000099977
D-dopachrome decarboxylase
Tissue enhanced
Detected in all
liver:
29.5
DDX1
ENSSSCG00000008619
ENSG00000079785
DEAD-box helicase 1
Tissue enhanced
Detected in all
lens:
103.4
DDX10
ENSSSCG00000015011
ENSG00000178105
DEAD-box helicase 10
Low tissue specificity
Detected in all
DDX11
ENSSSCG00000000745
ENSG00000013573
DEAD/H-box helicase 11
Low tissue specificity
Detected in all
DDX17
ENSSSCG00000000104
ENSG00000100201
DEAD-box helicase 17
Low tissue specificity
Detected in all
DDX18
ENSSSCG00000015712
ENSG00000088205
DEAD-box helicase 18
Low tissue specificity
Detected in all
DDX19B
ENSSSCG00000002722
ENSG00000157349
DEAD-box helicase 19B
Low tissue specificity
Detected in all
DDX20
ENSSSCG00000006783
ENSG00000064703
DEAD-box helicase 20
Group enriched
Detected in all
lens:
24.8
testis:
76.3
DDX21
ENSSSCG00000010247
ENSG00000165732
DExD-box helicase 21
Low tissue specificity
Detected in all
DDX23
ENSSSCG00000000176
ENSG00000174243
DEAD-box helicase 23
Low tissue specificity
Detected in all
DDX24
ENSSSCG00000002470
ENSG00000089737
DEAD-box helicase 24
Tissue enhanced
Detected in all
testis:
57.2
DDX27
ENSSSCG00000022915
ENSG00000124228
DEAD-box helicase 27
Low tissue specificity
Detected in all
DDX28
ENSSSCG00000026038
ENSG00000182810
DEAD-box helicase 28
Tissue enhanced
Detected in all
testis:
39.1
DDX31
ENSSSCG00000005729
ENSG00000125485
DEAD-box helicase 31
Low tissue specificity
Detected in all
DDX39A
ENSSSCG00000013776
ENSG00000123136
DExD-box helicase 39A
Tissue enhanced
Detected in all
testis:
47.1
DDX39B
ENSSSCG00000001400
ENSG00000198563
Spliceosome RNA helicase DDX39B
Low tissue specificity
Detected in all
DDX3X
ENSSSCG00000012252
ENSG00000215301
ATP-dependent RNA helicase DDX3X
Low tissue specificity
Detected in all
DDX41
ENSSSCG00000032642
ENSG00000183258
DEAD-box helicase 41
Low tissue specificity
Detected in all
DDX42
ENSSSCG00000017289
ENSG00000198231
DEAD-box helicase 42
Low tissue specificity
Detected in all
DDX46
ENSSSCG00000026644
ENSG00000145833
Probable ATP-dependent RNA helicase DDX46
Low tissue specificity
Detected in all
DDX47
ENSSSCG00000033149
ENSG00000213782
DEAD-box helicase 47
Low tissue specificity
Detected in all
DDX49
ENSSSCG00000025329
ENSG00000105671
DEAD-box helicase 49
Low tissue specificity
Detected in all
DDX5
ENSSSCG00000032092
ENSG00000108654
DEAD-box helicase 5
Low tissue specificity
Detected in all
DDX50
ENSSSCG00000010246
ENSG00000107625
DExD-box helicase 50
Low tissue specificity
Detected in all
DDX51
ENSSSCG00000028735
ENSG00000185163
DEAD-box helicase 51
Low tissue specificity
Detected in all
DDX52
ENSSSCG00000021275
ENSG00000278053
DExD-box helicase 52
Low tissue specificity
Detected in all
DDX54
ENSSSCG00000009876
ENSG00000123064
DEAD-box helicase 54
Low tissue specificity
Detected in all
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