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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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16894 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CTF1
ENSSSCG00000007774
ENSG00000150281
Cardiotrophin 1
Low tissue specificity
Detected in many
CTGF
ENSSSCG00000004192
ENSG00000118523
Connective tissue growth factor
Tissue enriched
Detected in many
cartilage:
384.2
CTH
ENSSSCG00000003789
ENSG00000116761
Cystathionine gamma-lyase
Group enriched
Detected in many
kidney:
30.9
liver:
88.3
CTHRC1
ENSSSCG00000006051
ENSG00000164932
Collagen triple helix repeat containing 1
Tissue enhanced
Detected in many
lens:
61.5
ovary:
25.0
CTIF
ENSSSCG00000004506
ENSG00000134030
Cap binding complex dependent translation initiation factor
Tissue enhanced
Detected in all
lens:
50.3
CTLA4
ENSSSCG00000016122
ENSG00000163599
Cytotoxic T-lymphocyte protein 4 precursor
Tissue enhanced
Detected in some
large intestine:
8.5
lymphoid tissue:
20.8
stomach:
6.7
CTNNA1
ENSSSCG00000014339
ENSG00000044115
Catenin alpha 1
Low tissue specificity
Detected in all
CTNNB1
ENSSSCG00000011274
ENSG00000168036
Catenin beta-1
Low tissue specificity
Detected in all
CTNNBIP1
ENSSSCG00000036868
ENSG00000178585
Catenin beta interacting protein 1
Tissue enhanced
Detected in all
brain:
29.3
CTNNBL1
ENSSSCG00000007337
ENSG00000132792
Beta-catenin-like protein 1
Low tissue specificity
Detected in all
CTNND1
ENSSSCG00000013174
ENSG00000198561
Catenin delta 1
Low tissue specificity
Detected in all
CTNND2
ENSSSCG00000016780
ENSG00000169862
Catenin delta 2
Tissue enhanced
Detected in many
brain:
57.2
pineal gland:
25.0
CTNS
ENSSSCG00000017865
ENSG00000040531
Cystinosin, lysosomal cystine transporter
Tissue enhanced
Detected in all
vagus nerve:
43.2
CTPS1
ENSSSCG00000003973
ENSG00000171793
CTP synthase 1
Tissue enhanced
Detected in all
lymphoid tissue:
27.8
CTPS2
ENSSSCG00000012146
ENSG00000047230
CTP synthase 2
Low tissue specificity
Detected in all
CTR9
ENSSSCG00000013406
ENSG00000198730
CTR9 homolog, Paf1/RNA polymerase II complex component
Low tissue specificity
Detected in all
CTRC
ENSSSCG00000027215
ENSG00000162438
Chymotrypsin-C precursor
Tissue enhanced
Detected in some
adipose tissue:
4.4
gallbladder:
9.4
mesothelial tissue:
4.2
CTSA
ENSSSCG00000007431
ENSG00000064601
Lysosomal protective protein precursor
Low tissue specificity
Detected in all
CTSB
ENSSSCG00000023666
ENSG00000164733
Cathepsin B Cathepsin B light chain Cathepsin B heavy chain
Low tissue specificity
Detected in all
CTSC
ENSSSCG00000014924
ENSG00000109861
Cathepsin C
Tissue enriched
Detected in many
ovary:
200.8
CTSD
ENSSSCG00000040793
ENSG00000117984,ENSG00000250644
Cathepsin D precursor
Tissue enhanced
Detected in all
synovial tissue:
98.7
CTSF
ENSSSCG00000038918
ENSG00000174080
Cathepsin F
Low tissue specificity
Detected in all
CTSH
ENSSSCG00000001770
ENSG00000103811
Pro-cathepsin H Cathepsin H mini chain Cathepsin H Cathepsin H heavy chain Cathepsin H light chain
Tissue enhanced
Detected in all
ovary:
77.2
synovial tissue:
85.6
CTSO
ENSSSCG00000008867
ENSG00000256043
Cathepsin O
Tissue enriched
Detected in all
choroid plexus:
64.0
CTSS
ENSSSCG00000006648
ENSG00000163131
Cathepsin S
Tissue enhanced
Detected in many
lymphoid tissue:
65.7
CTSV
ENSSSCG00000011171
ENSG00000136943
Cathepsin L1 Cathepsin L1 heavy chain Cathepsin L1 light chain
Tissue enhanced
Detected in all
cornea:
126.5
liver:
80.8
CTSW
ENSSSCG00000012970
ENSG00000172543
Cathepsin W
Tissue enriched
Detected in many
lymphoid tissue:
70.7
CTSZ
ENSSSCG00000007522
ENSG00000101160
Cathepsin Z precursor
Tissue enhanced
Detected in all
synovial tissue:
77.8
CTTN
ENSSSCG00000031769
ENSG00000085733
Cortactin
Low tissue specificity
Detected in all
CTTNBP2
ENSSSCG00000016625
ENSG00000077063
Cortactin binding protein 2
Tissue enhanced
Detected in all
kidney:
75.6
CTTNBP2NL
ENSSSCG00000006781
ENSG00000143079
CTTNBP2 N-terminal like
Low tissue specificity
Detected in all
CTU2
ENSSSCG00000033920
ENSG00000174177
Cytosolic thiouridylase subunit 2
Low tissue specificity
Detected in all
CTXN1
ENSSSCG00000036220
ENSG00000178531
Cortexin 1
Tissue enriched
Detected in some
brain:
90.5
CTXN3
ENSSSCG00000036570
ENSG00000205279
Cortexin 3
Tissue enhanced
Detected in many
brain:
23.1
dura mater:
22.3
pineal gland:
33.0
CUEDC1
ENSSSCG00000017624
ENSG00000180891
CUE domain containing 1
Low tissue specificity
Detected in all
CUEDC2
ENSSSCG00000033359
ENSG00000107874
CUE domain containing 2
Tissue enhanced
Detected in all
vagus nerve:
75.0
CUL1
ENSSSCG00000015455
ENSG00000055130
Cullin 1
Low tissue specificity
Detected in all
CUL2
ENSSSCG00000011104
ENSG00000108094
Cullin 2
Low tissue specificity
Detected in all
CUL3
ENSSSCG00000016234
ENSG00000036257
Cullin 3
Tissue enhanced
Detected in all
lens:
78.4
testis:
58.9
CUL4A
ENSSSCG00000009556
ENSG00000139842
Cullin 4A
Low tissue specificity
Detected in all
CUL4B
ENSSSCG00000029478
ENSG00000158290
Cullin 4B
Tissue enhanced
Detected in all
pituitary gland:
69.0
CUL5
ENSSSCG00000029198
ENSG00000166266
Cullin 5
Low tissue specificity
Detected in all
CUL7
ENSSSCG00000001657
ENSG00000044090
Cullin 7
Low tissue specificity
Detected in all
CUL9
ENSSSCG00000030196
ENSG00000112659
Cullin 9
Low tissue specificity
Detected in all
CUTA
ENSSSCG00000001512
ENSG00000112514
CutA divalent cation tolerance homolog
Tissue enhanced
Detected in all
lens:
76.5
CUTC
ENSSSCG00000010542
ENSG00000119929
CutC copper transporter
Low tissue specificity
Detected in all
CUX1
ENSSSCG00000007681
ENSG00000257923
Cut like homeobox 1
Low tissue specificity
Detected in all
CUX2
ENSSSCG00000009831
ENSG00000111249
Cut like homeobox 2
Tissue enhanced
Detected in many
adrenal gland:
30.8
brain:
22.8
choroid plexus:
37.1
liver:
32.3
CWC15
ENSSSCG00000014961
ENSG00000150316
CWC15 spliceosome associated protein homolog
Low tissue specificity
Detected in all
CWC22
ENSSSCG00000016008
ENSG00000163510
CWC22 spliceosome associated protein homolog
Low tissue specificity
Detected in all
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