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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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16894 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CKAP2
ENSSSCG00000009378
ENSG00000136108
Cytoskeleton associated protein 2
Tissue enhanced
Detected in many
lymphoid tissue:
32.9
CKAP2L
ENSSSCG00000008089
ENSG00000169607
Cytoskeleton associated protein 2 like
Tissue enhanced
Detected in many
large intestine:
16.8
lymphoid tissue:
16.2
small intestine:
19.1
stomach:
37.0
CKAP4
ENSSSCG00000000171
ENSG00000136026
Cytoskeleton-associated protein 4
Tissue enhanced
Detected in all
cartilage:
61.8
ovary:
56.8
CKAP5
ENSSSCG00000013249
ENSG00000175216
Cytoskeleton associated protein 5
Low tissue specificity
Detected in all
CKB
ENSSSCG00000021220
ENSG00000166165
Creatine kinase B-type
Tissue enhanced
Detected in many
brain:
121.7
pineal gland:
104.9
retina:
70.4
smooth muscle:
65.9
CKS1B
ENSSSCG00000006538
ENSG00000160688
Cyclin-dependent kinases regulatory subunit 1
Tissue enriched
Detected in all
lens:
165.1
CKS2
ENSSSCG00000021161
ENSG00000123975
CDC28 protein kinase regulatory subunit 2
Low tissue specificity
Detected in all
CLASP1
ENSSSCG00000039157
ENSG00000074054
Cytoplasmic linker associated protein 1
Low tissue specificity
Detected in all
CLASP2
ENSSSCG00000011236
ENSG00000163539
Cytoplasmic linker associated protein 2
Tissue enhanced
Detected in all
brain:
52.7
CLBA1
ENSSSCG00000040365
ENSG00000140104
Clathrin binding box of aftiphilin containing 1
Tissue enhanced
Detected in all
testis:
27.5
CLCA1
ENSSSCG00000006933
ENSG00000016490
Chloride channel accessory 1
Tissue enhanced
Detected in some
esophagus:
245.3
male glands:
91.9
upper respiratory system:
255.5
CLCA2
ENSSSCG00000006935
ENSG00000137975
Chloride channel accessory 2
Tissue enhanced
Detected in all
cornea:
39.9
male glands:
40.5
skin:
26.2
CLCC1
ENSSSCG00000006841
ENSG00000121940
Chloride channel CLIC like 1
Low tissue specificity
Detected in all
CLCF1
ENSSSCG00000012915
ENSG00000175505
Cardiotrophin like cytokine factor 1
Low tissue specificity
Detected in all
CLCN2
ENSSSCG00000021581
ENSG00000114859
Chloride voltage-gated channel 2
Tissue enhanced
Detected in many
large intestine:
24.6
vagus nerve:
28.5
CLCN3
ENSSSCG00000009713
ENSG00000109572
Chloride voltage-gated channel 3
Low tissue specificity
Detected in all
CLCN5
ENSSSCG00000023026
ENSG00000171365
H(+)/Cl(-) exchange transporter 5
Tissue enhanced
Detected in many
kidney:
46.2
CLCN6
ENSSSCG00000003429
ENSG00000011021
Chloride voltage-gated channel 6
Tissue enriched
Detected in all
epididymis:
70.2
CLCN7
ENSSSCG00000008024
ENSG00000103249
Chloride voltage-gated channel 7
Low tissue specificity
Detected in all
CLDN1
ENSSSCG00000040904
ENSG00000163347
Claudin-1
Low tissue specificity
Detected in all
CLDN11
ENSSSCG00000011747
ENSG00000013297,ENSG00000285218
Claudin-11
Tissue enriched
Detected in some
brain:
149.9
CLDN12
ENSSSCG00000035114
ENSG00000157224
Claudin-12
Low tissue specificity
Detected in all
CLDN15
ENSSSCG00000038901
ENSG00000106404
Claudin-15
Group enriched
Detected in many
adipose tissue:
17.5
mesothelial tissue:
34.7
small intestine:
57.1
CLDN19
ENSSSCG00000034921
ENSG00000164007
Claudin-19
Tissue enhanced
Detected in all
kidney:
22.5
vagus nerve:
79.4
CLDN20
ENSSSCG00000004067
ENSG00000171217
Claudin-20 precursor
Low tissue specificity
Detected in all
CLDN22
ENSSSCG00000027901
Claudin-22
Group enriched
Detected in many
endometrium:
20.8
esophagus:
15.0
male glands:
30.8
salivary gland:
47.0
upper respiratory system:
24.4
CLDN23
ENSSSCG00000006966
ENSG00000253958
Claudin-23
Tissue enhanced
Detected in many
male glands:
33.3
CLDN25
ENSSSCG00000015051
ENSG00000228607
Claudin 25
Tissue enriched
Detected in some
epididymis:
30.6
CLDN4
ENSSSCG00000007718
ENSG00000189143
Claudin-4
Tissue enhanced
Detected in many
upper respiratory system:
62.5
CLDN6
ENSSSCG00000023743
ENSG00000184697
Claudin-6
Tissue enhanced
Detected in many
lens:
19.5
ovary:
8.7
CLDN7
ENSSSCG00000017934
ENSG00000181885
Claudin-7 precursor
Tissue enhanced
Detected in many
large intestine:
56.5
male glands:
40.9
CLDN8
ENSSSCG00000012030
ENSG00000156284
Claudin-8
Tissue enhanced
Detected in many
breast:
64.0
kidney:
44.5
male glands:
37.7
thyroid gland:
54.2
CLDN9
ENSSSCG00000021536
ENSG00000213937
Claudin-9
Tissue enhanced
Detected in many
pituitary gland:
31.2
CLDND1
ENSSSCG00000011980
ENSG00000080822
Claudin domain-containing protein 1
Low tissue specificity
Detected in all
CLEC11A
ENSSSCG00000036814
ENSG00000105472
C-type lectin domain containing 11A
Low tissue specificity
Detected in all
CLEC12A
ENSSSCG00000039287
ENSG00000172322
C-type lectin domain family 12 member A
Low tissue specificity
Detected in all
CLEC14A
ENSSSCG00000023760
ENSG00000176435
C-type lectin domain containing 14A
Low tissue specificity
Detected in many
CLEC16A
ENSSSCG00000026569
ENSG00000038532
C-type lectin domain containing 16A
Low tissue specificity
Detected in all
CLEC17A
ENSSSCG00000013777
ENSG00000187912
C-type lectin domain containing 17A
Tissue enriched
Detected in many
lymphoid tissue:
33.0
CLEC1A
ENSSSCG00000000649
ENSG00000150048
C-type lectin domain family 1 member A
Low tissue specificity
Detected in many
CLEC2B
ENSSSCG00000000656
ENSG00000110852
Uncharacterized protein LOC100520839
Low tissue specificity
Detected in all
CLEC3A
ENSSSCG00000034604
ENSG00000166509
C-type lectin domain family 3 member A
Tissue enriched
Detected in some
cartilage:
199.8
CLEC3B
ENSSSCG00000011299
ENSG00000163815
C-type lectin domain family 3 member B
Tissue enhanced
Detected in many
adipose tissue:
80.1
CLEC4G
ENSSSCG00000039007
ENSG00000182566
C-type lectin domain family 4 member G
Group enriched
Detected in all
liver:
53.4
lymphoid tissue:
26.1
CLEC5A
ENSSSCG00000021933
ENSG00000258227
C-type lectin domain family 5 member A
Tissue enhanced
Detected in many
ovary:
7.9
CLEC7A
ENSSSCG00000000648
ENSG00000172243
C-type lectin domain family 7 member A
Tissue enhanced
Detected in many
lung:
9.6
CLGN
ENSSSCG00000026360
ENSG00000153132
Calmegin precursor
Group enriched
Detected in many
choroid plexus:
20.8
male glands:
21.9
testis:
81.2
CLHC1
ENSSSCG00000008402
ENSG00000162994
Clathrin heavy chain linker domain containing 1
Tissue enhanced
Detected in many
fallopian tube:
36.3
CLIC2
ENSSSCG00000039998
ENSG00000155962
Chloride intracellular channel protein 2
Low tissue specificity
Detected in all
CLIC3
ENSSSCG00000037395
ENSG00000169583
Chloride intracellular channel 3
Tissue enhanced
Detected in many
cornea:
37.8
thyroid gland:
75.4
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