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Keyword
Chromosome
1
2
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7
8
9
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11
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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16894 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
POU2F1
ENSSSCG00000006310
ENSG00000143190
POU domain, class 2, transcription factor 1
Low tissue specificity
Detected in all
POU2F2
ENSSSCG00000037132
ENSG00000028277
POU domain, class 2, transcription factor 2
Tissue enhanced
Detected in many
lymphoid tissue:
56.2
stomach:
25.0
upper respiratory system:
25.1
POU2F3
ENSSSCG00000028237
ENSG00000137709
POU class 2 homeobox 3
Group enriched
Detected in some
breast:
35.7
skin:
88.7
POU3F1
ENSSSCG00000003646
ENSG00000185668
POU class 3 homeobox 1
Tissue enhanced
Detected in some
skin:
10.9
vagus nerve:
36.6
POU4F1
ENSSSCG00000025334
ENSG00000152192
POU class 4 homeobox 1
Tissue enhanced
Detected in some
brain:
11.8
gallbladder:
7.8
retina:
15.2
POU4F2
ENSSSCG00000026015
ENSG00000151615
POU class 4 homeobox 2
Tissue enhanced
Detected in many
cartilage:
19.0
POU5F2
ENSSSCG00000036467
ENSG00000248483
POU domain class 5, transcription factor 2
Low tissue specificity
Detected in all
POU6F2
ENSSSCG00000037764
ENSG00000106536
POU class 6 homeobox 2
Tissue enhanced
Detected in many
cornea:
20.3
testis:
20.1
PP2D1
ENSSSCG00000027327
ENSG00000183977
Protein phosphatase 2C like domain containing 1
Tissue enriched
Detected in all
testis:
46.1
PPA1
ENSSSCG00000010261
ENSG00000180817
Pyrophosphatase (inorganic) 1
Tissue enhanced
Detected in many
brain:
55.9
pineal gland:
64.9
PPA2
ENSSSCG00000022788
ENSG00000138777
Pyrophosphatase (inorganic) 2
Low tissue specificity
Detected in all
PPAN
ENSSSCG00000013662
ENSG00000130810
Suppressor of SWI4 1 homolog
Low tissue specificity
Detected in all
PPARA
ENSSSCG00000000006
ENSG00000186951
Peroxisome proliferator-activated receptor alpha
Tissue enhanced
Detected in all
kidney:
45.2
liver:
68.3
PPARD
ENSSSCG00000001539
ENSG00000112033
Peroxisome proliferator-activated receptor delta
Tissue enhanced
Detected in all
stomach:
76.6
PPARG
ENSSSCG00000011579
ENSG00000132170
Peroxisome proliferator-activated receptor gamma
Tissue enhanced
Detected in many
adipose tissue:
52.9
aorta:
32.5
bone marrow:
41.6
large intestine:
29.5
lymphoid tissue:
33.8
PPARGC1A
ENSSSCG00000029275
ENSG00000109819
Peroxisome proliferator-activated receptor gamma coactivator 1-alpha
Tissue enhanced
Detected in many
kidney:
43.3
male glands:
65.2
salivary gland:
35.2
PPARGC1B
ENSSSCG00000014437
ENSG00000155846
PPARG coactivator 1 beta
Tissue enhanced
Detected in many
stomach:
41.6
PPAT
ENSSSCG00000008902
ENSG00000128059
Phosphoribosyl pyrophosphate amidotransferase
Low tissue specificity
Detected in all
PPBP
ENSSSCG00000037579
ENSG00000163736
Platelet basic protein
Low tissue specificity
Detected in all
PPCDC
ENSSSCG00000027478
ENSG00000138621
Phosphopantothenoylcysteine decarboxylase
Low tissue specificity
Detected in all
PPEF1
ENSSSCG00000030274
ENSG00000086717
Protein phosphatase with EF-hand domain 1
Group enriched
Detected in many
brain:
37.4
testis:
15.5
PPFIA1
ENSSSCG00000037451
ENSG00000131626
PTPRF interacting protein alpha 1
Low tissue specificity
Detected in all
PPFIA2
ENSSSCG00000000940
ENSG00000139220
PTPRF interacting protein alpha 2
Tissue enhanced
Detected in many
brain:
35.6
retina:
25.0
PPFIA3
ENSSSCG00000022324
ENSG00000177380
PTPRF interacting protein alpha 3
Tissue enhanced
Detected in all
brain:
23.8
PPFIBP1
ENSSSCG00000000549
ENSG00000110841
PPFIA binding protein 1
Low tissue specificity
Detected in all
PPFIBP2
ENSSSCG00000014598
ENSG00000166387
PPFIA binding protein 2
Low tissue specificity
Detected in all
PPHLN1
ENSSSCG00000000793
ENSG00000134283
Periphilin 1
Low tissue specificity
Detected in all
PPIB
ENSSSCG00000034137
ENSG00000166794
Peptidylprolyl isomerase B
Low tissue specificity
Detected in all
PPIC
ENSSSCG00000031128
ENSG00000168938
Peptidylprolyl isomerase C
Low tissue specificity
Detected in all
PPID
ENSSSCG00000008878
ENSG00000171497
Peptidyl-prolyl cis-trans isomerase D
Tissue enhanced
Detected in all
lens:
60.1
PPIF
ENSSSCG00000010330
ENSG00000108179
Peptidylprolyl isomerase F
Tissue enhanced
Detected in all
choroid plexus:
60.1
PPIG
ENSSSCG00000031123
ENSG00000138398
Peptidylprolyl isomerase G
Low tissue specificity
Detected in all
PPIH
ENSSSCG00000003964
ENSG00000171960
Peptidylprolyl isomerase H
Low tissue specificity
Detected in all
PPIL2
ENSSSCG00000010083
ENSG00000100023
Peptidylprolyl isomerase like 2
Low tissue specificity
Detected in all
PPIL3
ENSSSCG00000016096
ENSG00000240344
Peptidylprolyl isomerase like 3
Low tissue specificity
Detected in all
PPIL4
ENSSSCG00000028867
ENSG00000131013
Peptidylprolyl isomerase like 4
Low tissue specificity
Detected in all
PPIL6
ENSSSCG00000004413
ENSG00000185250
Peptidyl-prolyl cis-trans isomerase-like 6
Tissue enhanced
Detected in some
choroid plexus:
34.3
fallopian tube:
41.8
testis:
27.2
upper respiratory system:
17.8
PPIP5K1
ENSSSCG00000004704
ENSG00000168781
Diphosphoinositol pentakisphosphate kinase 1
Tissue enhanced
Detected in all
retina:
44.8
PPIP5K2
ENSSSCG00000024999
ENSG00000145725
Diphosphoinositol pentakisphosphate kinase 2
Tissue enhanced
Detected in all
lens:
64.2
PPL
ENSSSCG00000007927
ENSG00000118898
Periplakin
Tissue enhanced
Detected in many
cornea:
48.9
lens:
49.6
mouth:
70.7
PPM1A
ENSSSCG00000005084
ENSG00000100614
Protein phosphatase, Mg2+/Mn2+ dependent 1A
Low tissue specificity
Detected in all
PPM1B
ENSSSCG00000008451
ENSG00000138032
Protein phosphatase, Mg2+/Mn2+ dependent 1B
Low tissue specificity
Detected in all
PPM1D
ENSSSCG00000026665
ENSG00000170836
Protein phosphatase, Mg2+/Mn2+ dependent 1D
Tissue enhanced
Detected in all
testis:
46.8
PPM1E
ENSSSCG00000038932
ENSG00000175175
Protein phosphatase, Mg2+/Mn2+ dependent 1E
Group enriched
Detected in many
brain:
38.4
heart:
30.1
pineal gland:
17.8
retina:
20.7
PPM1F
ENSSSCG00000010079
ENSG00000100034
Protein phosphatase, Mg2+/Mn2+ dependent 1F
Low tissue specificity
Detected in all
PPM1G
ENSSSCG00000027135
ENSG00000115241
Protein phosphatase, Mg2+/Mn2+ dependent 1G
Tissue enhanced
Detected in all
testis:
73.6
PPM1H
ENSSSCG00000036751
ENSG00000111110
Protein phosphatase, Mg2+/Mn2+ dependent 1H
Low tissue specificity
Detected in all
PPM1J
ENSSSCG00000006774
ENSG00000155367
Protein phosphatase, Mg2+/Mn2+ dependent 1J
Tissue enhanced
Detected in all
skeletal muscle:
37.6
PPM1K
ENSSSCG00000038867
ENSG00000163644
Protein phosphatase, Mg2+/Mn2+ dependent 1K
Tissue enhanced
Detected in all
heart:
48.7
PPM1L
ENSSSCG00000023434
ENSG00000163590
Protein phosphatase, Mg2+/Mn2+ dependent 1L
Tissue enhanced
Detected in many
skeletal muscle:
36.8
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