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Gene name
Human disease related genes
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Within tissue variation
UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Digestive system diseases
Endocrine and metabolic diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
Respiratory diseases
Skin diseases
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Subclass
Class
Biological process
Molecular function
Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
MT
Unmapped
X
Y
External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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16894 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000029474
ENSG00000169857
Tissue enhanced
Detected in all
testis:
71.6
na
ENSSSCG00000029553
ENSG00000176155
Low tissue specificity
Detected in all
na
ENSSSCG00000029577
ENSG00000048162
Low tissue specificity
Detected in all
na
ENSSSCG00000029596
Tissue enhanced
Detected in many
large intestine:
30.6
lymphoid tissue:
83.7
small intestine:
21.7
na
ENSSSCG00000029600
Low tissue specificity
Detected in all
na
ENSSSCG00000029623
Tissue enhanced
Detected in many
gallbladder:
12.9
smooth muscle:
24.0
urinary bladder:
12.2
na
ENSSSCG00000029627
ENSG00000241945,ENSG00000275464
Low tissue specificity
Detected in all
na
ENSSSCG00000029630
Tissue enhanced
Detected in all
lens:
83.7
na
ENSSSCG00000029642
Tissue enhanced
Detected in some
brain:
2.4
kidney:
2.4
upper respiratory system:
2.2
na
ENSSSCG00000029658
Tissue enhanced
Detected in some
liver:
4.3
lymphoid tissue:
1.7
upper respiratory system:
1.7
na
ENSSSCG00000029683
Tissue enhanced
Detected in all
gallbladder:
47.8
na
ENSSSCG00000029696
Low tissue specificity
Detected in all
na
ENSSSCG00000029705
Low tissue specificity
Detected in many
na
ENSSSCG00000029760
ENSG00000198894
Low tissue specificity
Detected in all
na
ENSSSCG00000029761
Tissue enhanced
Detected in all
liver:
24.3
na
ENSSSCG00000029771
ENSG00000099715,ENSG00000102290
Tissue enhanced
Detected in many
brain:
21.9
cartilage:
29.1
na
ENSSSCG00000029791
Low tissue specificity
Detected in many
na
ENSSSCG00000029857
Low tissue specificity
Detected in all
na
ENSSSCG00000029866
ENSG00000164221
Tissue enhanced
Detected in many
heart:
28.5
na
ENSSSCG00000029902
ENSG00000173715
Tissue enhanced
Detected in many
epididymis:
21.8
kidney:
23.1
na
ENSSSCG00000029908
Tissue enhanced
Detected in some
brain:
2.1
dura mater:
1.7
testis:
1.4
upper respiratory system:
2.5
na
ENSSSCG00000029938
Low tissue specificity
Detected in all
na
ENSSSCG00000030002
ENSG00000141428
Tissue enhanced
Detected in all
lens:
58.3
na
ENSSSCG00000030003
ENSG00000102317
Tissue enhanced
Detected in many
testis:
9.7
na
ENSSSCG00000030015
SCAN domain-containing 1-like
Low tissue specificity
Detected in all
na
ENSSSCG00000030086
Tissue enhanced
Detected in many
brain:
35.9
thyroid gland:
11.6
na
ENSSSCG00000030088
Tissue enhanced
Detected in all
ovary:
34.7
na
ENSSSCG00000030110
Low tissue specificity
Detected in all
na
ENSSSCG00000030112
Tissue enhanced
Detected in all
lens:
34.8
na
ENSSSCG00000030122
ENSG00000149929
Low tissue specificity
Detected in all
na
ENSSSCG00000030131
ENSG00000169609
Tissue enhanced
Detected in all
lens:
40.7
na
ENSSSCG00000030183
ENSG00000108433
Low tissue specificity
Detected in all
na
ENSSSCG00000030195
Tissue enhanced
Detected in many
male glands:
14.2
na
ENSSSCG00000030197
ENSG00000198087
CD2-associated protein
Low tissue specificity
Detected in all
na
ENSSSCG00000030248
Low tissue specificity
Detected in all
na
ENSSSCG00000030257
Tissue enhanced
Detected in many
adipose tissue:
6.2
na
ENSSSCG00000030262
ENSG00000153982
Tissue enhanced
Detected in many
small intestine:
4.0
na
ENSSSCG00000030269
ENSG00000167080
Tissue enhanced
Detected in many
male glands:
51.7
mesothelial tissue:
31.5
upper respiratory system:
41.2
na
ENSSSCG00000030283
ENSG00000169249
Tissue enriched
Detected in all
cartilage:
45.8
na
ENSSSCG00000030295
ENSG00000102898
Low tissue specificity
Detected in all
na
ENSSSCG00000030300
Metallothionein-2A
Tissue enhanced
Detected in many
cartilage:
171.8
cornea:
132.6
liver:
305.5
na
ENSSSCG00000030310
Tissue enhanced
Detected in some
aorta:
1.8
brain:
1.6
vagus nerve:
2.9
na
ENSSSCG00000030318
ENSG00000143252
Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
Low tissue specificity
Detected in all
na
ENSSSCG00000030362
Tissue enhanced
Detected in all
choroid plexus:
51.3
liver:
58.3
na
ENSSSCG00000030373
ENSG00000197006
Methyltransferase-like protein 9 precursor
Low tissue specificity
Detected in all
na
ENSSSCG00000030414
Low tissue specificity
Detected in all
na
ENSSSCG00000030432
ENSG00000188060
Low tissue specificity
Detected in many
na
ENSSSCG00000030433
Low tissue specificity
Detected in many
na
ENSSSCG00000030436
Tissue enhanced
Detected in many
fallopian tube:
22.0
na
ENSSSCG00000030469
ENSG00000169679
Tissue enhanced
Detected in many
lymphoid tissue:
16.1
testis:
35.3
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