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Human disease related genes
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UMAP gene cluster
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
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14
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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16894 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
MRPS18C
ENSSSCG00000038042
ENSG00000163319
Mitochondrial ribosomal protein S18C
Low tissue specificity
Detected in all
MRPS2
ENSSSCG00000005759
ENSG00000122140
Mitochondrial ribosomal protein S2
Low tissue specificity
Detected in all
MRPS22
ENSSSCG00000035771
ENSG00000175110
Mitochondrial ribosomal protein S22
Low tissue specificity
Detected in all
MRPS23
ENSSSCG00000035193
ENSG00000181610
28S ribosomal protein S23, mitochondrial
Low tissue specificity
Detected in all
MRPS24
ENSSSCG00000016724
ENSG00000062582
Mitochondrial ribosomal protein S24
Low tissue specificity
Detected in all
MRPS25
ENSSSCG00000034318
ENSG00000131368
Mitochondrial ribosomal protein S25
Low tissue specificity
Detected in all
MRPS26
ENSSSCG00000007165
ENSG00000125901
Mitochondrial ribosomal protein S26
Low tissue specificity
Detected in all
MRPS28
ENSSSCG00000037782
ENSG00000147586
28S ribosomal protein S28, mitochondrial
Low tissue specificity
Detected in all
MRPS30
ENSSSCG00000032275
ENSG00000112996
Mitochondrial ribosomal protein S30
Low tissue specificity
Detected in all
MRPS31
ENSSSCG00000009372
ENSG00000102738
Mitochondrial ribosomal protein S31
Low tissue specificity
Detected in all
MRPS34
ENSSSCG00000008016
ENSG00000074071
28S ribosomal protein S34, mitochondrial
Low tissue specificity
Detected in all
MRPS35
ENSSSCG00000000547
ENSG00000061794
28S ribosomal protein S35, mitochondrial
Low tissue specificity
Detected in all
MRPS5
ENSSSCG00000008113
ENSG00000144029
Mitochondrial ribosomal protein S5
Low tissue specificity
Detected in all
MRPS6
ENSSSCG00000026981
ENSG00000243927
Mitochondrial ribosomal protein S6
Tissue enhanced
Detected in all
lens:
62.4
male glands:
50.3
MRPS7
ENSSSCG00000035134
ENSG00000125445
Mitochondrial ribosomal protein S7
Low tissue specificity
Detected in all
MRPS9
ENSSSCG00000028020
ENSG00000135972
28S ribosomal protein S9, mitochondrial
Low tissue specificity
Detected in all
MRRF
ENSSSCG00000005532
ENSG00000148187
Mitochondrial ribosome recycling factor
Low tissue specificity
Detected in all
MRS2
ENSSSCG00000001087
ENSG00000124532
MRS2, magnesium transporter
Low tissue specificity
Detected in all
MRTO4
ENSSSCG00000034814
ENSG00000053372
MRNA turnover protein 4 homolog
Low tissue specificity
Detected in all
MRVI1
ENSSSCG00000020720
ENSG00000072952
Murine retrovirus integration site 1 homolog
Tissue enhanced
Detected in many
smooth muscle:
58.2
MS4A1
ENSSSCG00000021812
ENSG00000156738
B-lymphocyte antigen CD20
Tissue enhanced
Detected in some
lung:
28.1
lymphoid tissue:
79.8
small intestine:
31.3
upper respiratory system:
52.6
MS4A10
ENSSSCG00000037987
ENSG00000172689
Membrane spanning 4-domains A10
Low tissue specificity
Detected in all
MS4A2
ENSSSCG00000034506
ENSG00000149534
High affinity immunoglobulin epsilon receptor subunit beta
Tissue enhanced
Detected in many
adipose tissue:
28.2
MS4A7
ENSSSCG00000013102
ENSG00000166927
Membrane-spanning 4-domains subfamily A member 7
Low tissue specificity
Detected in all
MSANTD1
ENSSSCG00000040111
ENSG00000188981
Myb/SANT DNA binding domain containing 1
Low tissue specificity
Detected in all
MSANTD2
ENSSSCG00000015201
ENSG00000120458
Myb/SANT DNA binding domain containing 2
Low tissue specificity
Detected in all
MSANTD3-TMEFF1
ENSSSCG00000005391
ENSG00000251349
MSANTD3-TMEFF1 readthrough
Tissue enhanced
Detected in many
brain:
44.5
MSANTD4
ENSSSCG00000026833
ENSG00000170903
Myb/SANT DNA binding domain containing 4 with coiled-coils
Low tissue specificity
Detected in all
MSC
ENSSSCG00000006187
ENSG00000178860
Musculin
Tissue enhanced
Detected in many
lymphoid tissue:
35.8
MSH2
ENSSSCG00000008428
ENSG00000095002
DNA mismatch repair protein Msh2
Low tissue specificity
Detected in all
MSH3
ENSSSCG00000014126
ENSG00000113318
MutS homolog 3
Low tissue specificity
Detected in all
MSH6
ENSSSCG00000020931
ENSG00000116062
MutS homolog 6
Low tissue specificity
Detected in all
MSI1
ENSSSCG00000029365
ENSG00000135097
RNA-binding protein Musashi homolog 1
Tissue enhanced
Detected in all
lens:
43.9
retina:
48.9
MSI2
ENSSSCG00000038505
ENSG00000153944
RNA-binding protein Musashi homolog 2
Low tissue specificity
Detected in all
MSL1
ENSSSCG00000017476
ENSG00000188895
Male specific lethal 1 homolog
Low tissue specificity
Detected in all
MSL2
ENSSSCG00000011650
ENSG00000174579
MSL complex subunit 2
Low tissue specificity
Detected in all
MSL3
ENSSSCG00000012114
ENSG00000005302
Male-specific lethal 3 homolog isoform 1
Low tissue specificity
Detected in all
MSLNL
ENSSSCG00000023487
ENSG00000162006
Mesothelin-like
Tissue enhanced
Detected in some
pituitary gland:
5.1
testis:
3.9
MSMB
ENSSSCG00000010400
ENSG00000263639
Beta-microseminoprotein precursor
Tissue enriched
Detected in some
male glands:
2458.8
MSMO1
ENSSSCG00000008857
ENSG00000052802
Methylsterol monooxygenase 1
Tissue enhanced
Detected in all
brain:
67.2
liver:
52.2
ovary:
61.3
MSN
ENSSSCG00000012365
ENSG00000147065
Moesin
Low tissue specificity
Detected in all
MSR1
ENSSSCG00000006979
ENSG00000038945
Macrophage scavenger receptor types I and II
Low tissue specificity
Detected in all
MSRA
ENSSSCG00000009684
ENSG00000175806
Methionine sulfoxide reductase A
Tissue enhanced
Detected in all
brain:
47.4
kidney:
39.7
liver:
46.1
MSRB1
ENSSSCG00000032932
ENSG00000198736
Methionine-R-sulfoxide reductase B1
Low tissue specificity
Detected in all
MSRB3
ENSSSCG00000026004
ENSG00000174099
Methionine sulfoxide reductase B3
Tissue enhanced
Detected in many
smooth muscle:
70.8
MSS51
ENSSSCG00000010300
ENSG00000166343
MSS51 mitochondrial translational activator
Tissue enriched
Detected in all
skeletal muscle:
61.1
MST1
ENSSSCG00000011386
ENSG00000173531
Macrophage stimulating 1
Group enriched
Detected in many
epididymis:
18.3
liver:
52.4
thyroid gland:
23.7
MST1R
ENSSSCG00000027992
ENSG00000164078
Macrophage stimulating 1 receptor
Tissue enhanced
Detected in many
skin:
31.4
stomach:
32.8
MSX1
ENSSSCG00000008727
ENSG00000163132
Homeobox protein MSX-1
Tissue enhanced
Detected in many
choroid plexus:
36.0
endometrium:
42.5
penis:
30.6
MT1A
ENSSSCG00000023684
Metallothionein-1A
Tissue enriched
Detected in all
liver:
134.9
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