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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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16894 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
IL1R1
ENSSSCG00000008162
ENSG00000115594
Interleukin 1 receptor type 1
Tissue enhanced
Detected in all
liver:
74.2
IL1R2
ENSSSCG00000028331
ENSG00000115590
Interleukin-1 receptor type 2 precursor
Group enriched
Detected in some
bone marrow:
28.9
skin:
31.0
testis:
9.3
upper respiratory system:
8.9
IL1RAP
ENSSSCG00000021206
ENSG00000196083
Interleukin 1 receptor accessory protein
Tissue enhanced
Detected in all
liver:
31.1
IL1RL1
ENSSSCG00000008159
ENSG00000115602
Interleukin 1 receptor like 1
Group enriched
Detected in many
gallbladder:
53.2
smooth muscle:
37.6
IL1RL2
ENSSSCG00000023550
ENSG00000115598
Interleukin 1 receptor like 2
Group enriched
Detected in some
cornea:
34.7
mouth:
26.2
skin:
62.1
IL2
ENSSSCG00000033267
ENSG00000109471
Interleukin-2
Low tissue specificity
Detected in all
IL20
ENSSSCG00000015654
ENSG00000162891
Interleukin 20
Group enriched
Detected in some
bone marrow:
2.6
dura mater:
8.5
penis:
2.1
retina:
5.7
upper respiratory system:
2.6
IL20RA
ENSSSCG00000004157
ENSG00000016402
Interleukin 20 receptor subunit alpha
Tissue enhanced
Detected in all
skin:
26.5
IL20RB
ENSSSCG00000022500
ENSG00000174564
Interleukin 20 receptor subunit beta
Tissue enhanced
Detected in some
cornea:
34.2
lymphoid tissue:
53.8
skin:
17.3
IL21
ENSSSCG00000009087
ENSG00000138684
Interleukin-21 precursor
Tissue enhanced
Detected in some
liver:
18.7
lymphoid tissue:
12.5
IL21R
ENSSSCG00000007816
ENSG00000103522
Interleukin 21 receptor
Tissue enhanced
Detected in many
lymphoid tissue:
30.9
IL22RA1
ENSSSCG00000038848
ENSG00000142677
Interleukin 22 receptor subunit alpha 1
Tissue enhanced
Detected in some
gallbladder:
14.6
liver:
29.4
small intestine:
17.4
stomach:
17.9
IL22RA2
ENSSSCG00000004158
ENSG00000164485
Interleukin 22 receptor subunit alpha 2
Tissue enriched
Detected in some
lymphoid tissue:
18.1
IL23A
ENSSSCG00000033520
ENSG00000110944
Interleukin-23 subunit alpha
Low tissue specificity
Detected in some
IL23R
ENSSSCG00000003801
ENSG00000162594
Interleukin-23 receptor
Low tissue specificity
Detected in all
IL24
ENSSSCG00000015655
ENSG00000162892
Interleukin 24
Tissue enriched
Detected in some
lymphoid tissue:
21.2
IL25
ENSSSCG00000028427
ENSG00000166090
Interleukin 25
Tissue enhanced
Detected in many
breast:
16.9
heart:
19.1
IL26
ENSSSCG00000039976
ENSG00000111536
Interleukin 26
Low tissue specificity
Detected in all
IL27
ENSSSCG00000039300
ENSG00000197272
Interleukin-27 subunit alpha precursor
Tissue enhanced
Detected in some
lung:
3.5
lymphoid tissue:
7.5
IL27RA
ENSSSCG00000013766
ENSG00000104998
Interleukin-27 receptor subunit alpha precursor
Tissue enhanced
Detected in many
lymphoid tissue:
36.5
ovary:
26.3
IL29
ENSSSCG00000036439
ENSG00000182393
Interleukin-29 precursor
Low tissue specificity
Detected in many
IL2RA
ENSSSCG00000022849
ENSG00000134460
Interleukin-2 receptor subunit alpha precursor
Tissue enhanced
Detected in many
lymphoid tissue:
23.3
IL2RB
ENSSSCG00000029668
ENSG00000100385
Interleukin 2 receptor subunit beta
Tissue enhanced
Detected in many
lymphoid tissue:
37.9
stomach:
44.7
IL33
ENSSSCG00000005203
ENSG00000137033
Interleukin-33
Low tissue specificity
Detected in many
IL34
ENSSSCG00000040629
ENSG00000157368
Interleukin-34 precursor
Tissue enhanced
Detected in many
brain:
39.4
vagus nerve:
22.3
IL4
ENSSSCG00000014282
ENSG00000113520
Interleukin-4
Tissue enhanced
Detected in many
fallopian tube:
8.5
testis:
6.5
IL4I1
ENSSSCG00000003192
ENSG00000104951
Interleukin 4 induced 1
Tissue enriched
Detected in many
testis:
91.7
IL4R
ENSSSCG00000007817
ENSG00000077238
Interleukin-4 receptor subunit alpha precursor
Low tissue specificity
Detected in many
IL5
ENSSSCG00000014278
ENSG00000113525
Interleukin-5
Low tissue specificity
Detected in all
IL5RA
ENSSSCG00000011528
ENSG00000091181
Interleukin 5 receptor subunit alpha
Tissue enhanced
Detected in some
brain:
5.4
heart:
3.7
stomach:
3.3
IL6
ENSSSCG00000020970
ENSG00000136244
Interleukin-6 precursor
Tissue enhanced
Detected in many
aorta:
19.9
dura mater:
15.0
mesothelial tissue:
31.4
IL6R
ENSSSCG00000027628
ENSG00000160712
Interleukin-6 receptor subunit alpha precursor
Tissue enhanced
Detected in many
liver:
62.2
IL6ST
ENSSSCG00000016916
ENSG00000134352
Interleukin-6 receptor subunit beta precursor
Low tissue specificity
Detected in all
IL7
ENSSSCG00000006161
ENSG00000104432
Interleukin-7
Tissue enhanced
Detected in many
liver:
10.3
lymphoid tissue:
16.8
IL7R
ENSSSCG00000016832
ENSG00000168685
Interleukin-7 receptor subunit alpha precursor
Tissue enhanced
Detected in many
lymphoid tissue:
39.3
small intestine:
13.2
stomach:
16.2
IL9R
ENSSSCG00000007973
ENSG00000124334
Interleukin 9 receptor
Tissue enhanced
Detected in many
epididymis:
12.4
male glands:
18.2
ILDR1
ENSSSCG00000025436
ENSG00000145103
Immunoglobulin like domain containing receptor 1
Tissue enhanced
Detected in many
thyroid gland:
28.5
ILDR2
ENSSSCG00000035124
ENSG00000143195
Immunoglobulin like domain containing receptor 2
Tissue enhanced
Detected in many
liver:
19.0
ILF2
ENSSSCG00000028553
ENSG00000143621
Interleukin enhancer binding factor 2
Low tissue specificity
Detected in all
ILF3
ENSSSCG00000013638
ENSG00000129351
Interleukin enhancer binding factor 3
Low tissue specificity
Detected in all
ILK
ENSSSCG00000023272
ENSG00000166333
Integrin linked kinase
Low tissue specificity
Detected in all
ILKAP
ENSSSCG00000016339
ENSG00000132323
ILK associated serine/threonine phosphatase
Low tissue specificity
Detected in all
ILVBL
ENSSSCG00000013830
ENSG00000105135
IlvB acetolactate synthase like
Low tissue specificity
Detected in all
IMMT
ENSSSCG00000024564
ENSG00000132305
Inner membrane mitochondrial protein
Tissue enhanced
Detected in all
heart:
76.0
IMP4
ENSSSCG00000015734
ENSG00000136718
IMP4, U3 small nucleolar ribonucleoprotein
Low tissue specificity
Detected in all
IMPA1
ENSSSCG00000033791
ENSG00000133731
Inositol monophosphatase 1
Low tissue specificity
Detected in all
IMPA2
ENSSSCG00000024162
ENSG00000141401
Inositol monophosphatase 2
Tissue enhanced
Detected in many
salivary gland:
40.1
IMPACT
ENSSSCG00000003713
ENSG00000154059
Impact RWD domain protein
Low tissue specificity
Detected in all
IMPAD1
ENSSSCG00000032846
ENSG00000104331
Inositol monophosphatase 3
Low tissue specificity
Detected in all
IMPDH1
ENSSSCG00000016585
ENSG00000106348
Inosine monophosphate dehydrogenase 1
Tissue enhanced
Detected in all
retina:
58.0
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