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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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16894 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
IFN-ALPHA-4
ENSSSCG00000032868
Interferon-alpha-4 precursor
Tissue enhanced
Detected in many
choroid plexus:
13.9
IFN-ALPHA-8
ENSSSCG00000037624
Sus scrofa interferon, alpha 5 (IFN-ALPHA-5), mRNA.
Low tissue specificity
Detected in many
IFN-ALPHA-9
ENSSSCG00000036535
Uncharacterized protein LOC100157766 precursor
Tissue enhanced
Detected in many
fallopian tube:
11.6
IFN-DELTA-1
ENSSSCG00000005152
Sus scrofa interferon-delta-2 (IFN-DELTA-2), mRNA.
Low tissue specificity
Detected in all
IFN-DELTA-10
ENSSSCG00000033330
Uncharacterized protein LOC100152129 precursor
Low tissue specificity
Detected in many
IFN-DELTA-11
ENSSSCG00000040246
Uncharacterized protein LOC100155754 precursor
Low tissue specificity
Detected in many
IFN-DELTA-3
ENSSSCG00000037750
Uncharacterized protein LOC100156558 precursor
Tissue enhanced
Detected in many
choroid plexus:
20.4
IFN-DELTA-4
ENSSSCG00000038862
Uncharacterized protein LOC100152899 precursor
Tissue enhanced
Detected in many
choroid plexus:
29.0
fallopian tube:
37.7
IFN-DELTA-5
ENSSSCG00000032099
Uncharacterized protein LOC100156933 precursor
Tissue enhanced
Detected in many
choroid plexus:
10.3
IFN-DELTA-6
ENSSSCG00000036510
Interferon-delta-6 precursor
Tissue enhanced
Detected in many
choroid plexus:
22.6
IFN-DELTA-7
ENSSSCG00000031022
Interferon delta 7 precursor
Group enriched
Detected in some
choroid plexus:
15.1
fallopian tube:
7.0
lung:
5.8
upper respiratory system:
4.2
IFN-DELTA-8
ENSSSCG00000039759
Uncharacterized protein LOC100153693 precursor
Tissue enhanced
Detected in many
thyroid gland:
22.6
IFN-DELTA-9
ENSSSCG00000034940
Uncharacterized protein LOC100153721 precursor
Low tissue specificity
Detected in many
IFN-OMEGA-2
ENSSSCG00000033910
Interferon-omega-2
Low tissue specificity
Detected in many
IFN-OMEGA-3
ENSSSCG00000040502
Interferon omega 3 precursor
Tissue enhanced
Detected in many
cartilage:
16.6
IFN-OMEGA-4
ENSSSCG00000031850
Sus scrofa interferon omega 5 (LOC100157354), mRNA.
Tissue enhanced
Detected in many
cartilage:
25.9
IFN-OMEGA-5
ENSSSCG00000038075
Interferon omega 7 precursor
Tissue enhanced
Detected in some
lymphoid tissue:
2.1
mouth:
1.1
skin:
1.4
testis:
1.6
upper respiratory system:
1.0
IFN-OMEGA-6
ENSSSCG00000032368
Interferon omega 6 precursor
Tissue enhanced
Detected in all
fallopian tube:
36.8
IFN-OMEGA-7
ENSSSCG00000040054
Inferferon omega 7 precursor
Low tissue specificity
Detected in many
IFNA1
ENSSSCG00000037818
Interferon alpha-1 precursor
Tissue enhanced
Detected in many
choroid plexus:
18.8
fallopian tube:
15.1
IFNAR1
ENSSSCG00000033115
ENSG00000142166
Interferon alpha/beta receptor 1 precursor
Low tissue specificity
Detected in all
IFNE
ENSSSCG00000005136
ENSG00000184995
Interferon epsilon
Tissue enhanced
Detected in many
skin:
31.1
thyroid gland:
27.4
IFNG
ENSSSCG00000032963
ENSG00000111537
Interferon gamma
Low tissue specificity
Detected in many
IFNGR1
ENSSSCG00000004156
ENSG00000027697
Interferon gamma receptor 1 precursor
Low tissue specificity
Detected in all
IFNGR2
ENSSSCG00000034378
ENSG00000159128
Interferon gamma receptor 2 precursor
Low tissue specificity
Detected in all
IFNK
ENSSSCG00000011011
ENSG00000147896
Interferon kappa
Low tissue specificity
Detected in many
IFNLR1
ENSSSCG00000032860
ENSG00000185436
Interferon lambda receptor 1
Tissue enhanced
Detected in all
liver:
21.9
IFRD1
ENSSSCG00000016646
ENSG00000006652
Interferon-related developmental regulator 1
Low tissue specificity
Detected in all
IFT122
ENSSSCG00000011589
ENSG00000163913
Intraflagellar transport 122
Low tissue specificity
Detected in all
IFT140
ENSSSCG00000008020
ENSG00000187535
Intraflagellar transport 140
Low tissue specificity
Detected in all
IFT172
ENSSSCG00000026367
ENSG00000138002
Intraflagellar transport 172
Low tissue specificity
Detected in all
IFT22
ENSSSCG00000007679
ENSG00000128581
Intraflagellar transport 22
Low tissue specificity
Detected in all
IFT27
ENSSSCG00000000139
ENSG00000100360
Intraflagellar transport 27
Low tissue specificity
Detected in all
IFT43
ENSSSCG00000002386
ENSG00000119650
Intraflagellar transport 43
Low tissue specificity
Detected in all
IFT46
ENSSSCG00000029649
ENSG00000118096
Intraflagellar transport 46
Low tissue specificity
Detected in all
IFT52
ENSSSCG00000007364
ENSG00000101052
Intraflagellar transport 52
Low tissue specificity
Detected in all
IFT57
ENSSSCG00000011941
ENSG00000114446
Intraflagellar transport 57
Tissue enhanced
Detected in all
lens:
117.6
IFT74
ENSSSCG00000005124
ENSG00000096872
Intraflagellar transport 74
Tissue enhanced
Detected in all
testis:
31.5
IFT80
ENSSSCG00000011733
ENSG00000068885
Intraflagellar transport 80
Low tissue specificity
Detected in all
IFT81
ENSSSCG00000009818
ENSG00000122970
Intraflagellar transport 81
Low tissue specificity
Detected in all
IFT88
ENSSSCG00000009270
ENSG00000032742
Intraflagellar transport 88
Low tissue specificity
Detected in all
IGDCC4
ENSSSCG00000004931
ENSG00000103742
Immunoglobulin superfamily DCC subclass member 4
Tissue enhanced
Detected in many
adrenal gland:
39.0
IGF1
ENSSSCG00000000857
ENSG00000017427
Insulin-like growth factor I precursor
Tissue enhanced
Detected in many
adipose tissue:
73.1
IGF2BP2
ENSSSCG00000011795
ENSG00000073792
Insulin like growth factor 2 mRNA binding protein 2
Low tissue specificity
Detected in all
IGF2BP3
ENSSSCG00000036695
ENSG00000136231
Insulin like growth factor 2 mRNA binding protein 3
Low tissue specificity
Detected in all
IGF2R
ENSSSCG00000004044
ENSG00000197081
Cation-independent mannose-6-phosphate receptor precursor
Low tissue specificity
Detected in all
IGFALS
ENSSSCG00000008013
ENSG00000099769
Insulin-like growth factor-binding protein complex acid labile subunit precursor
Tissue enriched
Detected in many
liver:
47.0
IGFBP2
ENSSSCG00000035392
ENSG00000115457
Insulin-like growth factor-binding protein 2
Tissue enhanced
Detected in many
choroid plexus:
61.1
cornea:
73.1
liver:
114.0
IGFBP3
ENSSSCG00000038783
ENSG00000146674
Insulin-like growth factor-binding protein 3
Tissue enhanced
Detected in many
upper respiratory system:
84.2
urinary bladder:
77.7
IGFBP4
ENSSSCG00000017472
ENSG00000141753
Insulin-like growth factor-binding protein 4 precursor
Tissue enhanced
Detected in many
ovary:
147.0
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