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Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
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Breast
Cartilage
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Choroid plexus
Cornea
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Dura mater
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Esophagus
Fallopian tube
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Heart
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Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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16512 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ASCL3
ENSSSCG00000014572
ENSG00000176009
Achaete-scute family bHLH transcription factor 3
Tissue enhanced
Detected in many
salivary gland:
11.9
upper respiratory system:
21.0
ASF1A
ENSSSCG00000004247
ENSG00000111875
Anti-silencing function 1A histone chaperone
Low tissue specificity
Detected in all
ASF1B
ENSSSCG00000013772
ENSG00000105011
Histone chaperone ASF1B
Tissue enhanced
Detected in many
lymphoid tissue:
26.6
testis:
22.3
upper respiratory system:
26.7
ASH1L
ENSSSCG00000006508
ENSG00000116539
ASH1 like histone lysine methyltransferase
Low tissue specificity
Detected in all
ASH2L
ENSSSCG00000021898
ENSG00000129691
Set1/Ash2 histone methyltransferase complex subunit ASH2
Low tissue specificity
Detected in all
ASIC2
ENSSSCG00000040177
ENSG00000108684
Acid sensing ion channel subunit 2
Group enriched
Detected in some
brain:
18.5
ductus deferens:
10.5
epididymis:
14.5
retina:
13.3
ASIC3
ENSSSCG00000027024
ENSG00000213199
Acid sensing ion channel subunit 3
Tissue enhanced
Detected in many
lymphoid tissue:
22.2
ASIP
ENSSSCG00000007277
ENSG00000101440
Agouti-signaling protein
Tissue enhanced
Detected in many
choroid plexus:
15.8
ASMTL
ENSSSCG00000037174
ENSG00000169093
Acetylserotonin O-methyltransferase like
Low tissue specificity
Detected in all
ASNA1
ENSSSCG00000038776
ENSG00000198356
ArsA arsenite transporter, ATP-binding, homolog 1 (bacterial)
Tissue enhanced
Detected in all
lens:
37.9
ASNS
ENSSSCG00000015340
ENSG00000070669
Asparagine synthetase
Low tissue specificity
Detected in all
ASNSD1
ENSSSCG00000016041
ENSG00000138381
Asparagine synthetase domain containing 1
Low tissue specificity
Detected in all
ASPA
ENSSSCG00000017861
ENSG00000108381
Aspartoacylase
Tissue enhanced
Detected in many
brain:
56.0
kidney:
19.8
vagus nerve:
32.5
ASPG
ENSSSCG00000039553
ENSG00000166183
Asparaginase
Tissue enhanced
Detected in many
liver:
7.6
male glands:
8.2
mesothelial tissue:
9.5
skin:
8.5
ASPH
ENSSSCG00000025087
ENSG00000198363
Aspartate beta-hydroxylase
Tissue enhanced
Detected in all
male glands:
108.5
ASPHD2
ENSSSCG00000009959
ENSG00000128203
Aspartate beta-hydroxylase domain containing 2
Tissue enhanced
Detected in many
brain:
22.6
stomach:
18.2
ASPM
ENSSSCG00000010896
ENSG00000066279
Abnormal spindle microtubule assembly
Tissue enhanced
Detected in many
lymphoid tissue:
29.3
ASPN
ENSSSCG00000008072
ENSG00000106819
Asporin precursor
Tissue enriched
Detected in all
dura mater:
89.1
ASPRV1
ENSSSCG00000033099
ENSG00000244617
Aspartic peptidase retroviral like 1
Tissue enhanced
Detected in many
skin:
31.6
ASPSCR1
ENSSSCG00000040727
ENSG00000169696
ASPSCR1, UBX domain containing tether for SLC2A4
Low tissue specificity
Detected in all
ASRGL1
ENSSSCG00000013065
ENSG00000162174
Asparaginase like 1
Tissue enhanced
Detected in all
testis:
45.8
ASS1
ENSSSCG00000005701
ENSG00000130707
Argininosuccinate synthase 1
Group enriched
Detected in many
kidney:
136.1
liver:
198.2
ASTE1
ENSSSCG00000011182
ENSG00000034533
Asteroid homolog 1
Low tissue specificity
Detected in all
ASTN1
ENSSSCG00000015513
ENSG00000152092
Astrotactin 1
Tissue enhanced
Detected in many
brain:
33.8
pineal gland:
12.0
pituitary gland:
15.2
ASTN2
ENSSSCG00000005502
ENSG00000148219
Astrotactin 2
Group enriched
Detected in many
brain:
31.8
cornea:
21.1
ASXL1
ENSSSCG00000007248
ENSG00000171456
Additional sex combs like 1, transcriptional regulator
Low tissue specificity
Detected in all
ASXL2
ENSSSCG00000008575
ENSG00000143970
Additional sex combs like 2, transcriptional regulator
Low tissue specificity
Detected in all
ASXL3
ENSSSCG00000003736
ENSG00000141431
Additional sex combs like 3, transcriptional regulator
Tissue enhanced
Detected in many
brain:
11.6
lens:
12.4
testis:
16.1
ATAD1
ENSSSCG00000010438
ENSG00000138138
ATPase family, AAA domain containing 1
Low tissue specificity
Detected in all
ATAD2
ENSSSCG00000005983
ENSG00000156802
ATPase family, AAA domain containing 2
Tissue enhanced
Detected in many
lymphoid tissue:
45.1
testis:
37.3
ATAD2B
ENSSSCG00000008591
ENSG00000119778
ATPase family, AAA domain containing 2B
Low tissue specificity
Detected in all
ATAD5
ENSSSCG00000035954
ENSG00000176208
ATPase family, AAA domain containing 5
Tissue enhanced
Detected in many
lymphoid tissue:
27.7
ATAT1
ENSSSCG00000024604
ENSG00000137343
Alpha-tubulin N-acetyltransferase 1
Low tissue specificity
Detected in all
ATCAY
ENSSSCG00000026754
ENSG00000167654
ATCAY, caytaxin
Group enriched
Detected in some
brain:
33.1
pineal gland:
17.0
pituitary gland:
12.7
retina:
11.3
ATE1
ENSSSCG00000010699
ENSG00000107669
Arginyltransferase 1
Low tissue specificity
Detected in all
ATF1
ENSSSCG00000016138
ENSG00000123268
Activating transcription factor 1
Low tissue specificity
Detected in all
ATF2
ENSSSCG00000038076
ENSG00000115966
Activating transcription factor 2
Low tissue specificity
Detected in all
ATF3
ENSSSCG00000015595
ENSG00000162772
Activating transcription factor 3
Tissue enhanced
Detected in many
aorta:
93.6
ductus deferens:
75.9
ATF4
ENSSSCG00000000084
ENSG00000128272
Cyclic AMP-dependent transcription factor ATF-4
Tissue enhanced
Detected in all
skeletal muscle:
180.7
ATF5
ENSSSCG00000003201
ENSG00000169136
Activating transcription factor 5
Tissue enhanced
Detected in all
lens:
54.3
liver:
130.9
salivary gland:
58.8
ATF6
ENSSSCG00000006346
ENSG00000118217
Activating transcription factor 6
Low tissue specificity
Detected in all
ATF6B
ENSSSCG00000001430
ENSG00000213676
Cyclic AMP-dependent transcription factor ATF-6 beta
Low tissue specificity
Detected in all
ATF7IP
ENSSSCG00000000612
ENSG00000171681
Activating transcription factor 7 interacting protein
Low tissue specificity
Detected in all
ATF7IP2
ENSSSCG00000020675
ENSG00000166669
Activating transcription factor 7 interacting protein 2
Tissue enhanced
Detected in many
retina:
18.2
testis:
43.5
ATG10
ENSSSCG00000025210
ENSG00000152348
Autophagy related 10
Low tissue specificity
Detected in all
ATG101
ENSSSCG00000033687
ENSG00000123395
Autophagy related 101
Low tissue specificity
Detected in all
ATG12
ENSSSCG00000033912
ENSG00000145782
Ubiquitin-like protein ATG12
Low tissue specificity
Detected in all
ATG13
ENSSSCG00000013257
ENSG00000175224
Autophagy related 13
Low tissue specificity
Detected in all
ATG14
ENSSSCG00000005058
ENSG00000126775
Autophagy related 14
Low tissue specificity
Detected in all
ATG16L1
ENSSSCG00000016300
ENSG00000085978
Autophagy-related protein 16-1 isoform 1
Low tissue specificity
Detected in all
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