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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
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Biological process
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Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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22342 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
DEFB1
ENSSSCG00000027555
Beta-defensin 1
Tissue enriched
Detected in some
lens:
244.7
DEFB1
ENSSSCG00000029990
ENSG00000164825
Beta-defensin 1 precursor
Group enriched
Detected in many
kidney:
122.3
large intestine:
44.2
male glands:
106.3
DEFB110
ENSSSCG00000001743
ENSG00000203970
Beta-defensin 110 precursor
Tissue enriched
Detected in some
epididymis:
52.3
DEFB114
ENSSSCG00000001741
ENSG00000177684
Beta-defensin 114 precursor
Tissue enriched
Detected in some
epididymis:
18.0
DEFB116
ENSSSCG00000007215
ENSG00000215545
Defensin beta 116
Tissue enriched
Detected in some
epididymis:
104.3
DEFB123
ENSSSCG00000007226
ENSG00000180424
Defensin beta 123
Tissue enriched
Detected in some
testis:
76.0
DEFB124
ENSSSCG00000030733
ENSG00000180383
Defensin beta 124
Group enriched
Detected in some
choroid plexus:
21.2
epididymis:
29.7
DEFB125
ENSSSCG00000007217
ENSG00000178591
Beta-defensin 125 precursor
Tissue enriched
Detected in single
epididymis:
135.8
DEFB127
ENSSSCG00000035759
ENSG00000088782
Defensin beta 127
Tissue enriched
Detected in some
epididymis:
106.9
DEFB128
ENSSSCG00000034080
ENSG00000185982
Defensin beta 128
Tissue enriched
Detected in some
epididymis:
252.3
DEFB129
ENSSSCG00000007218
ENSG00000125903
Beta-defensin 129 precursor
Tissue enriched
Detected in single
epididymis:
327.3
DEFB135
ENSSSCG00000039911
ENSG00000205883
Defensin beta 135
Group enriched
Detected in some
epididymis:
100.1
male glands:
40.0
DEGS1
ENSSSCG00000024484
ENSG00000143753
Sphingolipid delta(4)-desaturase DES1
Low tissue specificity
Detected in all
DEGS2
ENSSSCG00000002512
ENSG00000168350
Delta 4-desaturase, sphingolipid 2
Tissue enhanced
Detected in many
gallbladder:
17.3
stomach:
20.1
DENND1A
ENSSSCG00000005585
ENSG00000119522
DENN domain containing 1A
Low tissue specificity
Detected in all
DENND1B
ENSSSCG00000010900
ENSG00000213047
DENN domain containing 1B
Low tissue specificity
Detected in all
DENND1C
ENSSSCG00000013546
ENSG00000205744
DENN domain containing 1C
Tissue enhanced
Detected in many
lymphoid tissue:
43.0
stomach:
51.9
DENND2A
ENSSSCG00000016497
ENSG00000146966
DENN domain containing 2A
Low tissue specificity
Detected in all
DENND2C
ENSSSCG00000006755
ENSG00000175984
DENN domain containing 2C
Tissue enhanced
Detected in many
cornea:
21.5
mouth:
19.6
skin:
41.0
DENND2D
ENSSSCG00000025704
ENSG00000162777
DENN domain containing 2D
Tissue enhanced
Detected in many
lymphoid tissue:
32.2
male glands:
30.5
stomach:
38.9
DENND3
ENSSSCG00000030831
ENSG00000105339
DENN domain containing 3
Low tissue specificity
Detected in all
DENND4A
ENSSSCG00000004938
ENSG00000174485
DENN domain containing 4A
Low tissue specificity
Detected in all
DENND4B
ENSSSCG00000006568
ENSG00000198837
DENN domain containing 4B
Low tissue specificity
Detected in all
DENND4C
ENSSSCG00000005170
ENSG00000137145
DENN domain containing 4C
Low tissue specificity
Detected in all
DENND5A
ENSSSCG00000014578
ENSG00000184014
DENN domain containing 5A
Low tissue specificity
Detected in all
DENND5B
ENSSSCG00000022636
ENSG00000170456
DENN domain containing 5B
Low tissue specificity
Detected in all
DENND6A
ENSSSCG00000011467
ENSG00000174839
DENN domain containing 6A
Low tissue specificity
Detected in all
DENND6B
ENSSSCG00000034272
ENSG00000205593
DENN domain containing 6B
Low tissue specificity
Detected in all
DEPDC1
ENSSSCG00000033443
ENSG00000024526
DEP domain containing 1
Tissue enhanced
Detected in many
lymphoid tissue:
22.6
testis:
15.9
DEPDC1B
ENSSSCG00000016932
ENSG00000035499
DEP domain containing 1B
Tissue enhanced
Detected in many
lymphoid tissue:
15.0
testis:
12.3
DEPDC4
ENSSSCG00000036721
ENSG00000166153
DEP domain containing 4
Low tissue specificity
Detected in all
DEPP1
ENSSSCG00000022256
ENSG00000165507
DEPP1, autophagy regulator
Tissue enhanced
Detected in many
aorta:
74.1
cartilage:
67.8
mesothelial tissue:
77.9
DERA
ENSSSCG00000000599
ENSG00000023697
Deoxyribose-phosphate aldolase
Low tissue specificity
Detected in all
DERL1
ENSSSCG00000033690
ENSG00000136986
Derlin-1
Low tissue specificity
Detected in all
DERL3
ENSSSCG00000039626
ENSG00000099958
Derlin 3
Tissue enhanced
Detected in many
male glands:
18.7
DES
ENSSSCG00000020785
ENSG00000175084
Desmin
Tissue enhanced
Detected in many
skeletal muscle:
301.6
smooth muscle:
547.0
urinary bladder:
220.0
DESI2
ENSSSCG00000010876
ENSG00000121644
Desumoylating isopeptidase 2
Low tissue specificity
Detected in all
DET1
ENSSSCG00000005103
ENSG00000140543
DET1, COP1 ubiquitin ligase partner
Low tissue specificity
Detected in all
DEUP1
ENSSSCG00000014943
ENSG00000165325
Deuterosome assembly protein 1
Tissue enhanced
Detected in many
fallopian tube:
18.7
testis:
51.4
DEXI
ENSSSCG00000037224
ENSG00000182108
Dexi homolog
Tissue enhanced
Detected in all
heart:
103.1
DFFA
ENSSSCG00000003404
ENSG00000160049
DNA fragmentation factor subunit alpha
Low tissue specificity
Detected in all
DFFB
ENSSSCG00000021436
ENSG00000169598
DNA fragmentation factor subunit beta
Low tissue specificity
Detected in all
DGAT1
ENSSSCG00000005918
ENSG00000185000
Diacylglycerol O-acyltransferase 1
Tissue enhanced
Detected in all
small intestine:
35.6
DGAT2
ENSSSCG00000034102
ENSG00000062282
Diacylglycerol O-acyltransferase 2
Tissue enhanced
Detected in many
adipose tissue:
139.7
aorta:
74.8
bone marrow:
64.2
DGAT2L6
ENSSSCG00000012381
ENSG00000184210
Diacylglycerol O-acyltransferase 2 like 6
Group enriched
Detected in some
mouth:
20.3
skin:
25.6
DGCR2
ENSSSCG00000010111
ENSG00000070413
DiGeorge syndrome critical region gene 2
Low tissue specificity
Detected in all
DGCR8
ENSSSCG00000010135
ENSG00000128191
Microprocessor complex subunit DGCR8
Low tissue specificity
Detected in all
DGKA
ENSSSCG00000000370
ENSG00000065357
Diacylglycerol kinase alpha
Tissue enhanced
Detected in all
lymphoid tissue:
66.1
DGKB
ENSSSCG00000015355
ENSG00000136267
Diacylglycerol kinase beta
Tissue enhanced
Detected in many
brain:
68.3
salivary gland:
33.9
DGKD
ENSSSCG00000009432
ENSG00000077044
Diacylglycerol kinase delta
Low tissue specificity
Detected in all
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