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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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22342 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SURF4
ENSSSCG00000040710
ENSG00000148248
Surfeit 4
Low tissue specificity
Detected in all
SURF6
ENSSSCG00000032106
ENSG00000148296
Surfeit 6
Low tissue specificity
Detected in all
SUSD1
ENSSSCG00000005465
ENSG00000106868
Sushi domain containing 1
Tissue enhanced
Detected in many
lymphoid tissue:
36.3
SUSD2
ENSSSCG00000025393
ENSG00000099994
Sushi domain containing 2
Tissue enhanced
Detected in many
kidney:
42.5
SUSD3
ENSSSCG00000022237
ENSG00000157303
Sushi domain containing 3
Tissue enhanced
Detected in many
lymphoid tissue:
39.3
SUSD4
ENSSSCG00000011176
ENSG00000143502
Sushi domain containing 4
Tissue enhanced
Detected in many
brain:
19.2
pineal gland:
13.8
SUSD5
ENSSSCG00000039358
ENSG00000173705
Sushi domain containing 5
Tissue enriched
Detected in many
cartilage:
62.4
SUSD6
ENSSSCG00000002311
ENSG00000100647
Sushi domain containing 6
Low tissue specificity
Detected in all
SUV39H1
ENSSSCG00000032453
ENSG00000101945
Suppressor of variegation 3-9 homolog 1
Low tissue specificity
Detected in all
SUV39H2
ENSSSCG00000011048
ENSG00000152455
Histone-lysine N-methyltransferase SUV39H2
Low tissue specificity
Detected in all
SUZ12
ENSSSCG00000017744
ENSG00000178691
SUZ12 polycomb repressive complex 2 subunit
Low tissue specificity
Detected in all
SV2A
ENSSSCG00000006666
ENSG00000159164
Synaptic vesicle glycoprotein 2A
Group enriched
Detected in many
brain:
45.9
pineal gland:
30.2
retina:
24.4
SV2B
ENSSSCG00000002262
ENSG00000185518
Synaptic vesicle glycoprotein 2B
Group enriched
Detected in some
brain:
39.0
pineal gland:
59.9
retina:
27.8
SV2C
ENSSSCG00000034062
ENSG00000122012
Synaptic vesicle glycoprotein 2C
Tissue enhanced
Detected in some
brain:
25.1
pineal gland:
21.5
salivary gland:
33.9
SVEP1
ENSSSCG00000005455
ENSG00000165124
Sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1
Low tissue specificity
Detected in many
SVIL
ENSSSCG00000011022
ENSG00000197321
Supervillin
Tissue enhanced
Detected in all
skeletal muscle:
83.5
smooth muscle:
95.6
SVIP
ENSSSCG00000039613
ENSG00000198168
Small VCP interacting protein
Tissue enhanced
Detected in many
brain:
19.1
lens:
22.3
pituitary gland:
25.2
SVOP
ENSSSCG00000009941
ENSG00000166111
SV2 related protein
Tissue enhanced
Detected in some
brain:
28.4
pineal gland:
10.9
pituitary gland:
6.3
retina:
7.2
testis:
5.6
SVOPL
ENSSSCG00000016517
ENSG00000157703
SVOP like
Group enriched
Detected in some
lung:
33.0
male glands:
37.6
upper respiratory system:
23.3
SWAP70
ENSSSCG00000013410
ENSG00000133789
Switching B cell complex subunit SWAP70
Low tissue specificity
Detected in many
SWSAP1
ENSSSCG00000037146
ENSG00000173928
SWIM-type zinc finger 7 associated protein 1
Low tissue specificity
Detected in all
SWT1
ENSSSCG00000015569
ENSG00000116668
SWT1, RNA endoribonuclease homolog
Low tissue specificity
Detected in all
SYAP1
ENSSSCG00000012148
ENSG00000169895
Synapse-associated protein 1 isoform 2
Low tissue specificity
Detected in all
SYBU
ENSSSCG00000006023
ENSG00000147642
Syntabulin
Tissue enhanced
Detected in many
brain:
49.8
SYCE1
ENSSSCG00000010779
ENSG00000171772
Synaptonemal complex central element protein 1
Tissue enriched
Detected in all
testis:
65.4
SYCE1L
ENSSSCG00000002700
ENSG00000205078
Synaptonemal complex central element protein 1 like
Group enriched
Detected in many
cornea:
7.9
testis:
28.5
SYCE2
ENSSSCG00000013740
ENSG00000161860
Synaptonemal complex central element protein 2
Tissue enriched
Detected in all
testis:
57.4
SYCE3
ENSSSCG00000000963
ENSG00000217442
Synaptonemal complex central element protein 3
Tissue enriched
Detected in all
testis:
63.3
SYCN
ENSSSCG00000021959
ENSG00000179751
Syncollin
Group enriched
Detected in some
adipose tissue:
4.3
brain:
4.3
ovary:
7.5
SYCP1
ENSSSCG00000006750
ENSG00000198765
Synaptonemal complex protein 1
Tissue enriched
Detected in single
testis:
34.8
SYCP2
ENSSSCG00000007529
ENSG00000196074
Synaptonemal complex protein 2
Group enriched
Detected in many
epididymis:
13.9
testis:
55.2
SYCP3
ENSSSCG00000000863
ENSG00000139351
Synaptonemal complex protein 3
Tissue enriched
Detected in single
testis:
76.4
SYDE1
ENSSSCG00000013829
ENSG00000105137
Synapse defective Rho GTPase homolog 1
Low tissue specificity
Detected in all
SYDE2
ENSSSCG00000006947
ENSG00000097096
Synapse defective Rho GTPase homolog 2
Low tissue specificity
Detected in all
SYF2
ENSSSCG00000037481
ENSG00000117614
SYF2 pre-mRNA splicing factor
Low tissue specificity
Detected in all
SYK
ENSSSCG00000009589
ENSG00000165025
Tyrosine-protein kinase SYK
Tissue enhanced
Detected in many
lymphoid tissue:
45.1
upper respiratory system:
24.1
SYMPK
ENSSSCG00000003093
ENSG00000125755
Symplekin
Low tissue specificity
Detected in all
SYN1
ENSSSCG00000012276
ENSG00000008056
Synapsin-1
Tissue enriched
Detected in many
brain:
71.7
SYN2
ENSSSCG00000023225
ENSG00000157152
Synapsin II
Tissue enriched
Detected in many
brain:
57.8
SYNC
ENSSSCG00000021232
ENSG00000162520
Syncoilin, intermediate filament protein
Tissue enhanced
Detected in many
cervix:
44.4
SYNCRIP
ENSSSCG00000004294
ENSG00000135316
Synaptotagmin binding cytoplasmic RNA interacting protein
Low tissue specificity
Detected in all
SYNDIG1
ENSSSCG00000007130
ENSG00000101463
Synapse differentiation inducing 1
Tissue enriched
Detected in some
brain:
24.5
SYNDIG1L
ENSSSCG00000025000
ENSG00000183379
Synapse differentiation inducing 1 like
Group enriched
Detected in some
brain:
30.3
epididymis:
91.3
SYNE2
ENSSSCG00000005110
ENSG00000054654
Spectrin repeat containing nuclear envelope protein 2
Low tissue specificity
Detected in many
SYNE3
ENSSSCG00000002495
ENSG00000176438
Spectrin repeat containing nuclear envelope family member 3
Low tissue specificity
Detected in all
SYNE4
ENSSSCG00000002929
ENSG00000181392
Spectrin repeat containing nuclear envelope family member 4
Tissue enhanced
Detected in many
male glands:
29.1
salivary gland:
15.6
SYNGAP1
ENSSSCG00000001513
ENSG00000197283
Synaptic Ras GTPase activating protein 1
Tissue enhanced
Detected in many
brain:
38.8
SYNGR1
ENSSSCG00000020873
ENSG00000100321
Synaptogyrin-1
Tissue enhanced
Detected in all
brain:
44.1
SYNGR2
ENSSSCG00000031600
ENSG00000108639
Synaptogyrin 2
Tissue enhanced
Detected in many
male glands:
78.2
SYNGR3
ENSSSCG00000008036
ENSG00000127561
Synaptogyrin 3
Tissue enriched
Detected in some
brain:
27.9
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