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Keyword
Chromosome
1
2
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6
7
8
9
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11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
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22342 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ACOXL
ENSSSCG00000037846
ENSG00000153093
Acyl-CoA oxidase like
Group enriched
Detected in some
ductus deferens:
15.1
epididymis:
36.6
kidney:
18.8
ACP1
ENSSSCG00000008659
ENSG00000143727
Low molecular weight phosphotyrosine protein phosphatase
Low tissue specificity
Detected in all
ACP2
ENSSSCG00000013242
ENSG00000134575
Lysosomal acid phosphatase precursor
Low tissue specificity
Detected in all
ACP4
ENSSSCG00000024736
ENSG00000142513
Acid phosphatase 4
Tissue enhanced
Detected in all
lens:
40.4
testis:
36.4
ACP5
ENSSSCG00000032282
ENSG00000102575
Tartrate-resistant acid phosphatase type 5
Tissue enhanced
Detected in all
bone marrow:
45.5
dura mater:
103.0
ACP6
ENSSSCG00000006697
ENSG00000162836
Acid phosphatase 6, lysophosphatidic
Low tissue specificity
Detected in all
ACP7
ENSSSCG00000002971
ENSG00000183760
Acid phosphatase 7, tartrate resistant (putative)
Tissue enhanced
Detected in some
mouth:
2.9
skin:
12.1
testis:
5.2
ACR
ENSSSCG00000021265
ENSG00000100312
Acrosin precursor
Tissue enriched
Detected in some
testis:
102.7
ACRBP
ENSSSCG00000000700
ENSG00000111644
Acrosin binding protein
Tissue enriched
Detected in all
testis:
107.8
ACRV1
ENSSSCG00000015216
ENSG00000134940
Acrosomal protein SP-10 precursor
Tissue enriched
Detected in single
testis:
89.4
ACSBG1
ENSSSCG00000001760
ENSG00000103740
Acyl-CoA synthetase bubblegum family member 1
Tissue enhanced
Detected in many
brain:
37.3
vagus nerve:
16.3
ACSF2
ENSSSCG00000017566
ENSG00000167107
Acyl-CoA synthetase family member 2
Tissue enhanced
Detected in all
testis:
110.3
ACSF3
ENSSSCG00000023866
ENSG00000176715
Acyl-CoA synthetase family member 3
Low tissue specificity
Detected in all
ACSL1
ENSSSCG00000015784
ENSG00000151726
Long-chain-fatty-acid--CoA ligase 1
Tissue enhanced
Detected in all
liver:
113.3
skeletal muscle:
63.6
ACSL3
ENSSSCG00000016223
ENSG00000123983
Long-chain-fatty-acid--CoA ligase 3
Tissue enriched
Detected in all
male glands:
126.7
ACSL4
ENSSSCG00000012583
ENSG00000068366
Long-chain-fatty-acid--CoA ligase 4
Tissue enriched
Detected in all
ovary:
135.8
ACSL5
ENSSSCG00000031789
ENSG00000197142
Long-chain-fatty-acid--CoA ligase 5
Low tissue specificity
Detected in many
ACSM3
ENSSSCG00000007857
ENSG00000005187
Acyl-CoA synthetase medium chain family member 3
Tissue enhanced
Detected in many
fallopian tube:
50.3
liver:
26.6
ACSM4
ENSSSCG00000030033
ENSG00000215009
Acyl-CoA synthetase medium-chain family member 4
Tissue enriched
Detected in some
liver:
189.4
ACSM5
ENSSSCG00000026453
ENSG00000183549
Acyl-CoA synthetase medium chain family member 5
Low tissue specificity
Detected in all
ACSS1
ENSSSCG00000007133
ENSG00000154930
Acyl-CoA synthetase short chain family member 1
Low tissue specificity
Detected in many
ACSS2
ENSSSCG00000007286
ENSG00000131069
Acetyl-coenzyme A synthetase, cytoplasmic
Low tissue specificity
Detected in all
ACSS3
ENSSSCG00000000939
ENSG00000111058
Acyl-CoA synthetase short chain family member 3
Low tissue specificity
Detected in all
ACTA1
ENSSSCG00000010190
ENSG00000143632
Actin, alpha skeletal muscle
Tissue enriched
Detected in some
skeletal muscle:
1900.3
ACTA2
ENSSSCG00000010447
ENSG00000107796
Actin, aortic smooth muscle
Tissue enhanced
Detected in many
ductus deferens:
294.9
endometrium:
265.1
penis:
206.0
ACTB
ENSSSCG00000007585
ENSG00000075624
Actin, cytoplasmic 1 Actin, cytoplasmic 1, N-terminally processed
Low tissue specificity
Detected in all
ACTBL2
ENSSSCG00000016923
ENSG00000169067
Actin, beta like 2
Tissue enriched
Detected in some
skin:
21.7
ACTC1
ENSSSCG00000004803
ENSG00000159251
Actin, alpha cardiac muscle 1
Tissue enriched
Detected in some
heart:
271.3
ACTG1
ENSSSCG00000028355
ENSG00000184009
Actin gamma 1
Low tissue specificity
Detected in all
ACTG2
ENSSSCG00000008294
ENSG00000163017
Actin, gamma 2, smooth muscle, enteric
Tissue enriched
Detected in many
smooth muscle:
747.6
ACTL6A
ENSSSCG00000011762
ENSG00000136518
Actin like 6A
Low tissue specificity
Detected in all
ACTL6B
ENSSSCG00000007670
ENSG00000077080
Actin like 6B
Tissue enhanced
Detected in some
brain:
12.7
liver:
11.1
pituitary gland:
8.3
testis:
5.6
ACTL7A
ENSSSCG00000005439
ENSG00000187003
Actin like 7A
Tissue enriched
Detected in single
testis:
73.2
ACTL7B
ENSSSCG00000005438
ENSG00000148156
Actin like 7B
Tissue enriched
Detected in single
testis:
79.5
ACTL9
ENSSSCG00000013605
ENSG00000181786
Actin like 9
Tissue enriched
Detected in single
testis:
101.8
ACTN1
ENSSSCG00000036702
ENSG00000072110
Alpha-actinin-1
Tissue enhanced
Detected in all
smooth muscle:
150.4
ACTN2
ENSSSCG00000010144
ENSG00000077522
Alpha-actinin-2
Group enriched
Detected in many
heart:
140.1
skeletal muscle:
224.2
ACTN3
ENSSSCG00000038323
ENSG00000248746
Actinin alpha 3 (gene/pseudogene)
Tissue enriched
Detected in some
skeletal muscle:
250.4
ACTN4
ENSSSCG00000002965
ENSG00000130402
Actinin alpha 4
Low tissue specificity
Detected in all
ACTR10
ENSSSCG00000022299
ENSG00000131966
Actin related protein 10 homolog
Tissue enhanced
Detected in all
male glands:
84.2
ACTR1A
ENSSSCG00000010585
ENSG00000138107
ARP1 actin related protein 1 homolog A
Low tissue specificity
Detected in all
ACTR1B
ENSSSCG00000008194
ENSG00000115073
ARP1 actin related protein 1 homolog B
Low tissue specificity
Detected in all
ACTR2
ENSSSCG00000008358
ENSG00000138071
Actin-related protein 2
Low tissue specificity
Detected in all
ACTR3
ENSSSCG00000015710
ENSG00000115091
Actin-related protein 3
Low tissue specificity
Detected in all
ACTR3B
ENSSSCG00000016426
ENSG00000133627
ARP3 actin related protein 3 homolog B
Low tissue specificity
Detected in all
ACTR5
ENSSSCG00000007349
ENSG00000101442
ARP5 actin related protein 5 homolog
Low tissue specificity
Detected in all
ACTR6
ENSSSCG00000025682
ENSG00000075089
ARP6 actin related protein 6 homolog
Low tissue specificity
Detected in all
ACTR8
ENSSSCG00000011458
ENSG00000113812
ARP8 actin related protein 8 homolog
Low tissue specificity
Detected in all
ACTRT1
ENSSSCG00000012648
ENSG00000123165
Actin related protein T1
Tissue enriched
Detected in single
testis:
35.9
ACTRT2
ENSSSCG00000003357
ENSG00000169717
Actin related protein T2
Tissue enriched
Detected in single
testis:
77.5
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