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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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22342 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
STKLD1
ENSSSCG00000031407
ENSG00000198870
Serine/threonine kinase like domain containing 1
Tissue enriched
Detected in many
testis:
35.6
STMN1
ENSSSCG00000026257
ENSG00000117632
Stathmin
Tissue enhanced
Detected in all
brain:
111.8
lymphoid tissue:
71.7
STMN2
ENSSSCG00000006160
ENSG00000104435
Stathmin 2
Group enriched
Detected in many
brain:
88.4
pineal gland:
62.2
STMN3
ENSSSCG00000038405
ENSG00000197457
Stathmin 3
Tissue enhanced
Detected in all
brain:
30.7
STMN4
ENSSSCG00000009662
ENSG00000015592
Stathmin 4
Tissue enriched
Detected in some
brain:
106.0
STMND1
ENSSSCG00000001067
ENSG00000230873
Stathmin domain containing 1
Tissue enhanced
Detected in some
choroid plexus:
17.5
endometrium:
15.0
fallopian tube:
42.4
lung:
18.8
upper respiratory system:
30.3
STN1
ENSSSCG00000010605
ENSG00000107960
CST complex subunit STN1
Low tissue specificity
Detected in all
STOM
ENSSSCG00000036639
ENSG00000148175
Stomatin
Low tissue specificity
Detected in all
STOML1
ENSSSCG00000001913
ENSG00000067221
Stomatin like 1
Tissue enriched
Detected in all
epididymis:
44.6
STOML2
ENSSSCG00000039782
ENSG00000165283
Stomatin like 2
Low tissue specificity
Detected in all
STOML3
ENSSSCG00000009366
ENSG00000133115
Stomatin like 3
Tissue enhanced
Detected in all
fallopian tube:
39.0
STON2
ENSSSCG00000002412
ENSG00000140022
Stonin 2
Low tissue specificity
Detected in all
STOX1
ENSSSCG00000010245
ENSG00000165730
Storkhead box 1
Tissue enhanced
Detected in many
heart:
23.7
pituitary gland:
24.1
STOX2
ENSSSCG00000015780
ENSG00000173320
Storkhead box 2
Low tissue specificity
Detected in all
STPG1
ENSSSCG00000003541
ENSG00000001460
Sperm tail PG-rich repeat containing 1
Tissue enriched
Detected in many
testis:
73.2
STPG2
ENSSSCG00000009188
ENSG00000163116
Sperm tail PG-rich repeat containing 2
Low tissue specificity
Detected in all
STPG4
ENSSSCG00000008432
ENSG00000239605
Sperm-tail PG-rich repeat containing 4
Tissue enriched
Detected in many
testis:
91.0
STRA6
ENSSSCG00000001909
ENSG00000137868
Stimulated by retinoic acid 6
Tissue enhanced
Detected in many
kidney:
79.5
lens:
35.1
STRA8
ENSSSCG00000016533
ENSG00000146857
Stimulated by retinoic acid gene 8 protein homolog
Group enriched
Detected in some
epididymis:
19.3
testis:
19.1
STRADA
ENSSSCG00000017290
ENSG00000266173
STE20-related kinase adaptor alpha
Tissue enhanced
Detected in all
testis:
59.2
STRADB
ENSSSCG00000031271
ENSG00000082146
STE20-related kinase adaptor beta
Tissue enhanced
Detected in all
heart:
62.5
skeletal muscle:
62.5
STRAP
ENSSSCG00000021410
ENSG00000023734
Serine/threonine kinase receptor associated protein
Low tissue specificity
Detected in all
STRBP
ENSSSCG00000005582
ENSG00000165209
Spermatid perinuclear RNA binding protein
Low tissue specificity
Detected in all
STRC
ENSSSCG00000004702
ENSG00000242866
Stereocilin
Tissue enhanced
Detected in many
retina:
6.6
STRIP1
ENSSSCG00000006813
ENSG00000143093
Striatin interacting protein 1
Low tissue specificity
Detected in all
STRIP2
ENSSSCG00000016567
ENSG00000128578
Striatin interacting protein 2
Tissue enhanced
Detected in many
brain:
52.9
pineal gland:
26.5
STRN
ENSSSCG00000008499
ENSG00000115808
Striatin
Tissue enhanced
Detected in all
brain:
69.8
STRN3
ENSSSCG00000040657
ENSG00000196792
Striatin 3
Low tissue specificity
Detected in all
STRN4
ENSSSCG00000003104
ENSG00000090372
Striatin 4
Tissue enhanced
Detected in all
epididymis:
98.9
STT3A
ENSSSCG00000015214
ENSG00000134910
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A
Low tissue specificity
Detected in all
STT3B
ENSSSCG00000011229
ENSG00000163527
STT3B, catalytic subunit of the oligosaccharyltransferase complex
Low tissue specificity
Detected in all
STUB1
ENSSSCG00000008008
ENSG00000103266
STIP1 homology and U-box containing protein 1
Tissue enhanced
Detected in all
lens:
87.4
STUM
ENSSSCG00000024288
ENSG00000203685
Stum, mechanosensory transduction mediator homolog
Tissue enhanced
Detected in many
brain:
49.5
smooth muscle:
22.5
STX10
ENSSSCG00000013752
ENSG00000104915
Syntaxin 10
Low tissue specificity
Detected in all
STX11
ENSSSCG00000004125
ENSG00000135604
Syntaxin 11
Tissue enhanced
Detected in many
lung:
17.8
STX12
ENSSSCG00000024927
ENSG00000117758
Syntaxin-12
Low tissue specificity
Detected in all
STX17
ENSSSCG00000005386
ENSG00000136874
Syntaxin 17
Low tissue specificity
Detected in all
STX18
ENSSSCG00000038731
ENSG00000168818
Syntaxin 18
Tissue enhanced
Detected in all
endometrium:
55.9
STX19
ENSSSCG00000025170
ENSG00000178750
Syntaxin 19
Low tissue specificity
Detected in all
STX1A
ENSSSCG00000007772
ENSG00000106089
Syntaxin 1A
Tissue enriched
Detected in many
brain:
49.1
STX1B
ENSSSCG00000021238
ENSG00000099365
Syntaxin 1B
Group enriched
Detected in some
brain:
54.9
pineal gland:
26.2
STX2
ENSSSCG00000009747
ENSG00000111450
Syntaxin 2
Low tissue specificity
Detected in all
STX3
ENSSSCG00000013119
ENSG00000166900
Syntaxin 3
Tissue enhanced
Detected in many
retina:
73.9
STX4
ENSSSCG00000007768
ENSG00000103496
Syntaxin 4
Low tissue specificity
Detected in all
STX5
ENSSSCG00000026293
ENSG00000162236
Syntaxin-5
Group enriched
Detected in many
cartilage:
18.5
lens:
32.2
male glands:
55.3
STX6
ENSSSCG00000015539
ENSG00000135823
Syntaxin-6
Low tissue specificity
Detected in all
STX7
ENSSSCG00000004190
ENSG00000079950
Syntaxin 7
Low tissue specificity
Detected in all
STX8
ENSSSCG00000034964
ENSG00000170310
Syntaxin 8
Low tissue specificity
Detected in all
STXBP1
ENSSSCG00000005617
ENSG00000136854
Syntaxin binding protein 1
Group enriched
Detected in many
brain:
70.7
retina:
66.1
STXBP2
ENSSSCG00000013576
ENSG00000076944
Syntaxin binding protein 2
Low tissue specificity
Detected in all
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