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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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22342 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CCBE1
ENSSSCG00000004907
ENSG00000183287
Collagen and calcium binding EGF domains 1
Tissue enriched
Detected in many
adrenal gland:
69.4
CCDC102A
ENSSSCG00000028723
ENSG00000135736
Coiled-coil domain containing 102A
Low tissue specificity
Detected in many
CCDC102B
ENSSSCG00000032084
ENSG00000150636
Coiled-coil domain containing 102B
Tissue enhanced
Detected in some
esophagus:
6.7
lens:
23.4
stomach:
5.0
CCDC105
ENSSSCG00000013834
ENSG00000160994
Coiled-coil domain containing 105
Tissue enriched
Detected in some
testis:
51.2
CCDC106
ENSSSCG00000035081
ENSG00000173581
Coiled-coil domain containing 106
Tissue enhanced
Detected in all
brain:
33.9
CCDC107
ENSSSCG00000005313
ENSG00000159884
Coiled-coil domain containing 107
Tissue enhanced
Detected in all
male glands:
305.8
CCDC110
ENSSSCG00000015795
ENSG00000168491
Coiled-coil domain containing 110
Tissue enriched
Detected in many
testis:
65.6
CCDC113
ENSSSCG00000002803
ENSG00000103021
Coiled-coil domain-containing protein 113
Tissue enhanced
Detected in many
fallopian tube:
19.5
testis:
12.7
upper respiratory system:
11.7
CCDC114
ENSSSCG00000026689
ENSG00000105479
Coiled-coil domain containing 114
Tissue enhanced
Detected in many
choroid plexus:
27.8
fallopian tube:
35.7
lung:
33.0
CCDC115
ENSSSCG00000035628
ENSG00000136710
Coiled-coil domain containing 115
Low tissue specificity
Detected in all
CCDC117
ENSSSCG00000032261
ENSG00000159873
Coiled-coil domain containing 117
Low tissue specificity
Detected in all
CCDC120
ENSSSCG00000012288
ENSG00000147144
Coiled-coil domain containing 120
Tissue enhanced
Detected in many
stomach:
48.1
CCDC122
ENSSSCG00000009426
ENSG00000151773
Coiled-coil domain containing 122
Low tissue specificity
Detected in all
CCDC124
ENSSSCG00000013891
ENSG00000007080
Coiled-coil domain containing 124
Low tissue specificity
Detected in all
CCDC125
ENSSSCG00000016963
ENSG00000183323
Coiled-coil domain containing 125
Low tissue specificity
Detected in all
CCDC126
ENSSSCG00000029174
ENSG00000169193
Coiled-coil domain containing 126
Tissue enhanced
Detected in all
pineal gland:
42.0
retina:
37.1
CCDC127
ENSSSCG00000036783
ENSG00000164366
Coiled-coil domain-containing protein 127
Low tissue specificity
Detected in all
CCDC129
ENSSSCG00000016671
ENSG00000180347
Coiled-coil domain containing 129
Tissue enhanced
Detected in many
epididymis:
18.5
salivary gland:
34.8
upper respiratory system:
27.9
CCDC130
ENSSSCG00000013755
ENSG00000104957
Coiled-coil domain containing 130
Tissue enhanced
Detected in all
testis:
64.1
CCDC134
ENSSSCG00000035565
ENSG00000100147
Coiled-coil domain containing 134
Low tissue specificity
Detected in all
CCDC136
ENSSSCG00000016579
ENSG00000128596
Coiled-coil domain containing 136
Tissue enriched
Detected in all
testis:
85.8
CCDC137
ENSSSCG00000034716
ENSG00000185298
Coiled-coil domain containing 137
Low tissue specificity
Detected in all
CCDC138
ENSSSCG00000008135
ENSG00000163006
Coiled-coil domain containing 138
Tissue enhanced
Detected in all
epididymis:
47.3
CCDC14
ENSSSCG00000025349
ENSG00000175455
Coiled-coil domain containing 14
Low tissue specificity
Detected in all
CCDC142
ENSSSCG00000008270
ENSG00000135637
Coiled-coil domain containing 142
Low tissue specificity
Detected in all
CCDC146
ENSSSCG00000015412
ENSG00000135205
Coiled-coil domain containing 146
Tissue enhanced
Detected in all
fallopian tube:
31.2
testis:
32.7
CCDC148
ENSSSCG00000015876
ENSG00000153237
Coiled-coil domain containing 148
Tissue enhanced
Detected in many
choroid plexus:
20.5
kidney:
20.6
CCDC149
ENSSSCG00000023001
ENSG00000181982
Coiled-coil domain containing 149
Tissue enhanced
Detected in all
male glands:
56.4
CCDC15
ENSSSCG00000015206
ENSG00000149548
Coiled-coil domain containing 15
Tissue enhanced
Detected in all
testis:
47.0
CCDC150
ENSSSCG00000016069
ENSG00000144395
Coiled-coil domain containing 150
Tissue enriched
Detected in all
testis:
63.2
CCDC151
ENSSSCG00000013625
ENSG00000198003
Coiled-coil domain containing 151
Group enriched
Detected in many
kidney:
30.6
male glands:
44.2
thyroid gland:
49.5
CCDC152
ENSSSCG00000016867
ENSG00000198865
Coiled-coil domain containing 152
Group enriched
Detected in some
brain:
5.1
liver:
17.7
testis:
17.7
CCDC153
ENSSSCG00000015109
ENSG00000248712
Coiled-coil domain containing 153
Tissue enhanced
Detected in some
brain:
7.0
fallopian tube:
16.2
lung:
6.3
pituitary gland:
8.4
upper respiratory system:
12.2
CCDC154
ENSSSCG00000028139
ENSG00000197599
Coiled-coil domain containing 154
Tissue enhanced
Detected in many
male glands:
18.7
testis:
18.2
CCDC155
ENSSSCG00000003172
ENSG00000161609
Coiled-coil domain containing 155
Group enriched
Detected in some
retina:
16.0
testis:
34.5
CCDC157
ENSSSCG00000010003
ENSG00000187860
Coiled-coil domain containing 157
Tissue enhanced
Detected in many
testis:
68.0
CCDC158
ENSSSCG00000008983
ENSG00000163749
Coiled-coil domain containing 158
Tissue enhanced
Detected in all
testis:
35.1
CCDC160
ENSSSCG00000031011
ENSG00000203952
Coiled-coil domain containing 160
Tissue enhanced
Detected in many
testis:
35.7
CCDC167
ENSSSCG00000036178
ENSG00000198937
Coiled-coil domain-containing protein 167
Low tissue specificity
Detected in all
CCDC17
ENSSSCG00000021448
ENSG00000159588
Coiled-coil domain containing 17
Tissue enhanced
Detected in some
fallopian tube:
24.9
lung:
20.0
testis:
21.4
upper respiratory system:
25.7
CCDC170
ENSSSCG00000004087
ENSG00000120262
Coiled-coil domain containing 170
Tissue enhanced
Detected in all
brain:
46.3
fallopian tube:
50.8
CCDC171
ENSSSCG00000005182
ENSG00000164989
Coiled-coil domain containing 171
Group enriched
Detected in many
fallopian tube:
10.0
testis:
39.7
CCDC172
ENSSSCG00000010656
ENSG00000182645
Coiled-coil domain containing 172
Tissue enriched
Detected in single
testis:
26.2
CCDC173
ENSSSCG00000015935
ENSG00000154479
Coiled-coil domain containing 173
Tissue enhanced
Detected in many
fallopian tube:
40.6
testis:
30.4
CCDC174
ENSSSCG00000040702
ENSG00000154781
Coiled-coil domain-containing protein 174
Low tissue specificity
Detected in all
CCDC177
ENSSSCG00000002310
ENSG00000267909
Coiled-coil domain containing 177
Group enriched
Detected in some
brain:
7.9
retina:
13.9
CCDC178
ENSSSCG00000038703
ENSG00000166960
Coiled-coil domain containing 178
Tissue enriched
Detected in some
testis:
33.9
CCDC18
ENSSSCG00000006897
ENSG00000122483
Coiled-coil domain containing 18
Tissue enhanced
Detected in all
testis:
33.2
CCDC181
ENSSSCG00000028804
ENSG00000117477
Coiled-coil domain-containing protein 181
Tissue enhanced
Detected in many
choroid plexus:
27.5
pineal gland:
39.1
pituitary gland:
27.4
retina:
33.1
CCDC182
ENSSSCG00000017620
ENSG00000166329
Coiled-coil domain containing 182
Tissue enriched
Detected in single
testis:
58.5
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