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UMAP gene cluster
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Keyword
Chromosome
1
2
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7
8
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Stomach 1
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
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22342 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SLC35C1
ENSSSCG00000025647
ENSG00000181830
GDP-fucose transporter 1
Tissue enhanced
Detected in all
male glands:
33.3
SLC35C2
ENSSSCG00000022777
ENSG00000080189
Solute carrier family 35, member C2
Low tissue specificity
Detected in all
SLC35D1
ENSSSCG00000032043
ENSG00000116704
Solute carrier family 35 member D1
Tissue enhanced
Detected in all
large intestine:
33.3
liver:
26.4
SLC35D3
ENSSSCG00000004159
ENSG00000182747
Solute carrier family 35 member D3
Group enriched
Detected in some
adrenal gland:
11.4
brain:
24.9
SLC35E1
ENSSSCG00000013861
ENSG00000127526
Solute carrier family 35 member E1
Low tissue specificity
Detected in all
SLC35E2B
ENSSSCG00000003353
ENSG00000189339
Solute carrier family 35 member E2B
Tissue enhanced
Detected in all
liver:
48.9
SLC35E3
ENSSSCG00000000487
ENSG00000175782
Solute carrier family 35 member E3
Low tissue specificity
Detected in all
SLC35E4
ENSSSCG00000010012
ENSG00000100036
Solute carrier family 35 member E4
Tissue enhanced
Detected in many
brain:
23.8
SLC35F1
ENSSSCG00000004250
ENSG00000196376
Solute carrier family 35 member F1
Tissue enhanced
Detected in many
brain:
21.6
choroid plexus:
11.6
pineal gland:
17.5
vagus nerve:
17.1
SLC35F2
ENSSSCG00000015001
ENSG00000110660
Solute carrier family 35 member F2
Low tissue specificity
Detected in all
SLC35F3
ENSSSCG00000010162
ENSG00000183780
Solute carrier family 35 member F3
Tissue enhanced
Detected in many
brain:
16.7
lens:
16.4
SLC35F4
ENSSSCG00000005068
ENSG00000151812
Solute carrier family 35 member F4
Tissue enhanced
Detected in some
brain:
18.6
cornea:
7.1
skin:
15.7
SLC35F5
ENSSSCG00000015709
ENSG00000115084
Solute carrier family 35 member F5
Tissue enhanced
Detected in all
male glands:
50.8
SLC35F6
ENSSSCG00000008562
ENSG00000213699
Solute carrier family 35 member F6
Low tissue specificity
Detected in all
SLC35G1
ENSSSCG00000027230
ENSG00000176273
Solute carrier family 35 member G1
Tissue enhanced
Detected in many
dura mater:
23.4
small intestine:
16.5
SLC35G2
ENSSSCG00000021508
ENSG00000168917
Solute carrier family 35 member G2
Tissue enhanced
Detected in many
brain:
26.4
pineal gland:
14.9
pituitary gland:
19.5
SLC36A1
ENSSSCG00000035442
ENSG00000123643
Solute carrier family 36 member 1
Tissue enhanced
Detected in all
brain:
47.3
SLC36A2
ENSSSCG00000017086
ENSG00000186335
Solute carrier family 36 member 2
Group enriched
Detected in some
adipose tissue:
52.5
bone marrow:
25.4
skin:
14.0
vagus nerve:
33.5
SLC36A3
ENSSSCG00000038877
ENSG00000186334
Solute carrier family 36 member 3
Low tissue specificity
Detected in all
SLC36A4
ENSSSCG00000024933
ENSG00000180773
Solute carrier family 36 member 4
Low tissue specificity
Detected in all
SLC37A1
ENSSSCG00000012087
ENSG00000160190
Solute carrier family 37 member 1
Low tissue specificity
Detected in all
SLC37A2
ENSSSCG00000022536
ENSG00000134955
Solute carrier family 37 member 2
Tissue enhanced
Detected in all
choroid plexus:
58.4
SLC37A3
ENSSSCG00000032266
ENSG00000157800
Sugar phosphate exchanger 3
Tissue enhanced
Detected in all
lymphoid tissue:
43.2
SLC37A4
ENSSSCG00000015105
ENSG00000137700
Glucose-6-phosphate exchanger SLC37A4
Tissue enhanced
Detected in all
epididymis:
35.1
liver:
51.8
SLC38A1
ENSSSCG00000000807
ENSG00000111371
Solute carrier family 38 member 1
Tissue enhanced
Detected in many
male glands:
80.9
pineal gland:
84.3
retina:
71.6
SLC38A10
ENSSSCG00000022317
ENSG00000157637
Solute carrier family 38 member 10
Low tissue specificity
Detected in all
SLC38A11
ENSSSCG00000015903
ENSG00000169507
Solute carrier family 38 member 11
Tissue enhanced
Detected in some
adrenal gland:
8.5
choroid plexus:
35.9
pituitary gland:
21.5
SLC38A2
ENSSSCG00000000808
ENSG00000134294
Sodium-coupled neutral amino acid transporter 2
Low tissue specificity
Detected in all
SLC38A3
ENSSSCG00000011397
ENSG00000188338
Solute carrier family 38 member 3
Group enriched
Detected in many
choroid plexus:
43.4
liver:
136.6
retina:
56.5
SLC38A4
ENSSSCG00000026597
ENSG00000139209
Solute carrier family 38 member 4
Tissue enriched
Detected in some
liver:
117.9
SLC38A5
ENSSSCG00000025981
ENSG00000017483
Sodium-coupled neutral amino acid transporter 5
Tissue enhanced
Detected in all
lens:
33.0
SLC38A6
ENSSSCG00000005092
ENSG00000139974
Probable sodium-coupled neutral amino acid transporter 6
Low tissue specificity
Detected in all
SLC38A7
ENSSSCG00000040881
ENSG00000103042
Solute carrier family 38 member 7
Low tissue specificity
Detected in all
SLC38A8
ENSSSCG00000039218
ENSG00000166558
Solute carrier family 38 member 8
Tissue enhanced
Detected in some
retina:
8.4
SLC38A9
ENSSSCG00000030343
ENSG00000177058
Solute carrier family 38 member 9
Low tissue specificity
Detected in all
SLC39A1
ENSSSCG00000006561
ENSG00000143570
Solute carrier family 39 member 1
Low tissue specificity
Detected in all
SLC39A10
ENSSSCG00000031954
ENSG00000196950
Solute carrier family 39 member 10
Tissue enhanced
Detected in all
brain:
37.7
SLC39A11
ENSSSCG00000037754
ENSG00000133195
Solute carrier family 39 member 11
Tissue enhanced
Detected in many
male glands:
53.7
SLC39A12
ENSSSCG00000011039
ENSG00000148482
Solute carrier family 39 member 12
Tissue enriched
Detected in some
choroid plexus:
88.4
SLC39A13
ENSSSCG00000013238
ENSG00000165915
Solute carrier family 39 member 13
Low tissue specificity
Detected in all
SLC39A2
ENSSSCG00000029754
ENSG00000165794
Zinc transporter ZIP2
Tissue enriched
Detected in many
endometrium:
24.0
SLC39A3
ENSSSCG00000033968
ENSG00000141873
Solute carrier family 39 member 3
Tissue enhanced
Detected in all
epididymis:
53.8
SLC39A4
ENSSSCG00000005905
ENSG00000147804
Solute carrier family 39 member 4
Tissue enhanced
Detected in all
small intestine:
27.2
SLC39A5
ENSSSCG00000000385
ENSG00000139540
Solute carrier family 39 member 5
Group enriched
Detected in some
kidney:
23.8
liver:
40.4
small intestine:
24.6
SLC39A6
ENSSSCG00000027455
ENSG00000141424
Solute carrier family 39 member 6
Low tissue specificity
Detected in all
SLC39A7
ENSSSCG00000001475
ENSG00000112473
Zinc transporter SLC39A7 precursor
Tissue enhanced
Detected in all
male glands:
99.4
SLC39A8
ENSSSCG00000009169
ENSG00000138821
Solute carrier family 39 member 8
Tissue enhanced
Detected in many
male glands:
64.5
mesothelial tissue:
55.2
upper respiratory system:
35.1
SLC39A9
ENSSSCG00000028600
ENSG00000029364
Solute carrier family 39 member 9
Low tissue specificity
Detected in all
SLC3A1
ENSSSCG00000008449
ENSG00000138079
Neutral and basic amino acid transport protein rBAT
Tissue enhanced
Detected in many
gallbladder:
19.4
kidney:
43.3
male glands:
15.4
SLC3A2
ENSSSCG00000022404
ENSG00000168003
Solute carrier family 3 member 2
Low tissue specificity
Detected in all
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