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Gene name
Human disease related genes
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Within tissue variation
UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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22342 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
Expand
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000032045
Tissue enhanced
Detected in many
liver:
6.1
testis:
4.8
na
ENSSSCG00000032047
Tissue enhanced
Detected in many
mouth:
11.6
na
ENSSSCG00000032050
Tissue enhanced
Detected in some
cornea:
3.2
heart:
9.1
na
ENSSSCG00000032051
Low tissue specificity
Detected in many
na
ENSSSCG00000032056
Tissue enhanced
Detected in all
pineal gland:
38.0
na
ENSSSCG00000032059
ENSG00000205155
Low tissue specificity
Detected in all
na
ENSSSCG00000032061
Tissue enhanced
Detected in some
retina:
1.4
skin:
3.0
na
ENSSSCG00000032064
Low tissue specificity
Detected in many
na
ENSSSCG00000032065
Tissue enhanced
Detected in some
adipose tissue:
2.9
brain:
5.6
cornea:
6.1
mouth:
5.2
upper respiratory system:
2.4
na
ENSSSCG00000032066
Tissue enhanced
Detected in some
bone marrow:
3.8
brain:
3.4
choroid plexus:
4.2
ovary:
3.8
na
ENSSSCG00000032067
Low tissue specificity
Detected in all
na
ENSSSCG00000032072
Tissue enhanced
Detected in some
brain:
19.6
pituitary gland:
11.1
retina:
6.3
na
ENSSSCG00000032073
ENSG00000128185,ENSG00000278817
Low tissue specificity
Detected in all
na
ENSSSCG00000032075
Tissue enriched
Detected in single
brain:
3.6
na
ENSSSCG00000032076
ENSG00000163060
Tissue enhanced
Detected in some
fallopian tube:
12.6
lung:
16.2
testis:
27.4
upper respiratory system:
27.1
na
ENSSSCG00000032082
Low tissue specificity
Detected in many
na
ENSSSCG00000032086
ENSG00000198440
Low tissue specificity
Detected in all
na
ENSSSCG00000032087
Tissue enhanced
Detected in single
cervix:
2.5
na
ENSSSCG00000032095
Tissue enriched
Detected in some
liver:
25.8
na
ENSSSCG00000032098
Low tissue specificity
Detected in all
na
ENSSSCG00000032100
Tissue enriched
Detected in some
testis:
6.4
na
ENSSSCG00000032102
Group enriched
Detected in some
aorta:
1.3
brain:
2.7
heart:
1.8
na
ENSSSCG00000032103
Tissue enhanced
Detected in some
brain:
2.0
ductus deferens:
1.3
na
ENSSSCG00000032107
Tissue enriched
Detected in single
skin:
78.6
na
ENSSSCG00000032109
Not detected
Not detected
na
ENSSSCG00000032112
Tissue enriched
Detected in some
lymphoid tissue:
49.1
na
ENSSSCG00000032113
Low tissue specificity
Detected in all
na
ENSSSCG00000032114
Low tissue specificity
Detected in all
na
ENSSSCG00000032120
Tissue enriched
Detected in single
gallbladder:
15.1
na
ENSSSCG00000032121
Tissue enriched
Detected in single
brain:
2.2
na
ENSSSCG00000032122
ENSG00000179058
Tissue enriched
Detected in some
testis:
81.3
na
ENSSSCG00000032124
Group enriched
Detected in some
male glands:
8.9
salivary gland:
6.4
thyroid gland:
22.9
na
ENSSSCG00000032125
Tissue enriched
Detected in many
testis:
123.7
na
ENSSSCG00000032128
Tissue enhanced
Detected in some
heart:
10.1
liver:
7.5
lymphoid tissue:
4.7
na
ENSSSCG00000032129
Low tissue specificity
Detected in all
na
ENSSSCG00000032130
Tissue enhanced
Detected in single
testis:
1.1
na
ENSSSCG00000032132
Tissue enhanced
Detected in single
heart:
1.4
na
ENSSSCG00000032134
ENSG00000100744
GSK3-beta interaction protein
Low tissue specificity
Detected in all
na
ENSSSCG00000032135
Low tissue specificity
Detected in many
na
ENSSSCG00000032136
Group enriched
Detected in some
brain:
2.1
liver:
2.1
lymphoid tissue:
1.2
upper respiratory system:
1.0
na
ENSSSCG00000032139
Tissue enhanced
Detected in some
brain:
1.7
cornea:
7.3
fallopian tube:
2.9
thyroid gland:
2.4
upper respiratory system:
1.6
na
ENSSSCG00000032142
Tissue enriched
Detected in all
epididymis:
89.9
na
ENSSSCG00000032146
Tissue enhanced
Detected in many
brain:
32.9
na
ENSSSCG00000032147
Tissue enhanced
Detected in some
large intestine:
59.6
lung:
47.0
small intestine:
54.6
upper respiratory system:
146.7
na
ENSSSCG00000032148
Tissue enhanced
Detected in some
bone marrow:
1.4
male glands:
1.6
stomach:
1.2
na
ENSSSCG00000032152
Tissue enhanced
Detected in many
penis:
4.9
stomach:
4.3
na
ENSSSCG00000032158
Tissue enriched
Detected in some
small intestine:
14.2
na
ENSSSCG00000032159
Tissue enhanced
Detected in many
brain:
51.7
cartilage:
28.3
cervix:
30.6
pineal gland:
40.2
na
ENSSSCG00000032160
ENSG00000143107
Low tissue specificity
Detected in all
na
ENSSSCG00000032161
Group enriched
Detected in many
cornea:
26.2
male glands:
10.7
small intestine:
34.7
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