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Gene name
Human disease related genes
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Within tissue variation
UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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22342 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
Expand
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000011931
Low tissue specificity
Detected in all
na
ENSSSCG00000011944
Tissue enhanced
Detected in many
lens:
42.8
liver:
21.8
na
ENSSSCG00000011945
Group enriched
Detected in some
ovary:
2.7
testis:
9.5
na
ENSSSCG00000011952
Low tissue specificity
Detected in all
na
ENSSSCG00000011955
Tissue enhanced
Detected in some
large intestine:
1.6
skin:
1.8
small intestine:
3.1
upper respiratory system:
1.9
na
ENSSSCG00000011966
Tissue enhanced
Detected in many
cartilage:
8.7
cornea:
5.9
na
ENSSSCG00000011967
Tissue enriched
Detected in some
testis:
106.0
na
ENSSSCG00000011995
ENSG00000283434
Tissue enriched
Detected in single
testis:
84.8
na
ENSSSCG00000012003
Tissue enhanced
Detected in many
brain:
41.7
retina:
37.6
na
ENSSSCG00000012006
Low tissue specificity
Detected in many
na
ENSSSCG00000012014
Protein BTG3
Tissue enhanced
Detected in many
cartilage:
44.7
na
ENSSSCG00000012032
Tissue enriched
Detected in some
choroid plexus:
19.4
na
ENSSSCG00000012046
ENSG00000205670,ENSG00000273590
Tissue enhanced
Detected in all
lens:
46.7
skeletal muscle:
58.1
na
ENSSSCG00000012047
ENSG00000222018,ENSG00000277277
Tissue enriched
Detected in single
testis:
39.8
na
ENSSSCG00000012049
ENSG00000180509,ENSG00000276289
Group enriched
Detected in many
ductus deferens:
18.2
heart:
53.0
ovary:
16.4
small intestine:
35.1
na
ENSSSCG00000012052
Tissue enhanced
Detected in some
adipose tissue:
1.5
lung:
1.3
lymphoid tissue:
2.0
mesothelial tissue:
1.3
stomach:
1.7
na
ENSSSCG00000012060
ENSG00000183145
Tissue enhanced
Detected in all
lung:
24.1
na
ENSSSCG00000012074
ENSG00000182240
Low tissue specificity
Detected in many
na
ENSSSCG00000012093
Tissue enhanced
Detected in some
kidney:
1.0
thyroid gland:
2.2
na
ENSSSCG00000012094
Tissue enhanced
Detected in some
kidney:
1.0
thyroid gland:
2.5
na
ENSSSCG00000012097
Tissue enhanced
Detected in many
brain:
11.4
na
ENSSSCG00000012100
ENSG00000006757
Patatin-like phospholipase domain-containing protein 4 precursor
Tissue enhanced
Detected in many
lens:
9.5
na
ENSSSCG00000012101
ENSG00000011201
Tissue enriched
Detected in some
cartilage:
69.6
na
ENSSSCG00000012102
Low tissue specificity
Detected in all
na
ENSSSCG00000012103
ENSG00000101850
Tissue enhanced
Detected in many
bone marrow:
8.3
na
ENSSSCG00000012104
ENSG00000146950
Tissue enhanced
Detected in many
kidney:
24.8
male glands:
28.3
na
ENSSSCG00000012113
Amelogenin
Low tissue specificity
Detected in many
na
ENSSSCG00000012120
Tissue enhanced
Detected in some
dura mater:
5.5
lymphoid tissue:
6.8
stomach:
4.0
testis:
5.8
na
ENSSSCG00000012125
ENSG00000046651
Low tissue specificity
Detected in all
na
ENSSSCG00000012126
Tissue enhanced
Detected in many
brain:
107.7
vagus nerve:
58.1
na
ENSSSCG00000012143
Low tissue specificity
Detected in many
na
ENSSSCG00000012145
Tissue enhanced
Detected in some
bone marrow:
3.4
pineal gland:
8.3
na
ENSSSCG00000012152
ENSG00000047634
Tissue enhanced
Detected in all
lymphoid tissue:
29.7
na
ENSSSCG00000012166
Tissue enhanced
Detected in all
pineal gland:
90.7
na
ENSSSCG00000012174
ENSG00000184831
Low tissue specificity
Detected in all
na
ENSSSCG00000012175
ENSG00000165182
Group enriched
Detected in some
epididymis:
12.0
testis:
17.4
na
ENSSSCG00000012178
Tissue enhanced
Detected in all
male glands:
68.5
na
ENSSSCG00000012179
Low tissue specificity
Detected in many
na
ENSSSCG00000012186
ENSG00000176774
Tissue enriched
Detected in single
testis:
17.5
na
ENSSSCG00000012190
Tissue enriched
Detected in some
testis:
11.4
na
ENSSSCG00000012192
ENSG00000189186,ENSG00000226372
Tissue enriched
Detected in single
testis:
14.5
na
ENSSSCG00000012194
Tissue enriched
Detected in single
testis:
9.9
na
ENSSSCG00000012196
ENSG00000169306
Tissue enriched
Detected in some
brain:
17.6
na
ENSSSCG00000012197
Tissue enriched
Detected in single
testis:
8.8
na
ENSSSCG00000012200
Tissue enhanced
Detected in some
ductus deferens:
2.7
male glands:
6.3
skin:
2.4
na
ENSSSCG00000012202
Glycerol kinase
Tissue enhanced
Detected in all
kidney:
59.5
na
ENSSSCG00000012212
ENSG00000263465
Tissue enriched
Detected in single
testis:
12.4
na
ENSSSCG00000012213
Tissue enriched
Detected in single
testis:
13.4
na
ENSSSCG00000012217
Low tissue specificity
Detected in many
na
ENSSSCG00000012218
Tissue enhanced
Detected in some
lens:
2.5
pineal gland:
3.0
testis:
10.2
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