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Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
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Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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22342 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
HTD2
ENSSSCG00000035452
ENSG00000255154
Hydroxyacyl-thioester dehydratase type 2
Low tissue specificity
Detected in all
HTR1A
ENSSSCG00000016940
ENSG00000178394
5-hydroxytryptamine receptor 1A
Group enriched
Detected in some
brain:
23.9
testis:
6.3
HTR1D
ENSSSCG00000025500
ENSG00000179546
5-hydroxytryptamine receptor 1D
Tissue enhanced
Detected in many
ovary:
25.9
testis:
20.4
HTR1E
ENSSSCG00000035251
ENSG00000168830
5-hydroxytryptamine receptor 1E
Tissue enhanced
Detected in some
brain:
8.3
thyroid gland:
9.6
vagus nerve:
3.8
HTR1F
ENSSSCG00000030227
ENSG00000179097
5-hydroxytryptamine receptor 1F
Tissue enhanced
Detected in some
brain:
6.2
kidney:
9.9
salivary gland:
10.0
vagus nerve:
9.0
HTR2A
ENSSSCG00000037452
ENSG00000102468
5-hydroxytryptamine receptor 2A
Low tissue specificity
Detected in all
HTR2B
ENSSSCG00000016273
ENSG00000135914
5-hydroxytryptamine receptor 2B
Low tissue specificity
Detected in all
HTR2C
ENSSSCG00000012593
ENSG00000147246
5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled
Tissue enriched
Detected in some
choroid plexus:
103.0
HTR3A
ENSSSCG00000024497
ENSG00000166736
5-hydroxytryptamine receptor 3A
Group enriched
Detected in some
brain:
7.5
testis:
2.3
HTR3B
ENSSSCG00000015053
ENSG00000149305
5-hydroxytryptamine receptor 3B
Tissue enriched
Detected in some
testis:
52.3
HTR3C
ENSSSCG00000024689
ENSG00000178084
5-hydroxytryptamine receptor 3C
Tissue enriched
Detected in some
ovary:
22.3
HTR3D
ENSSSCG00000011784
ENSG00000186090
5-hydroxytryptamine receptor 3D
Tissue enhanced
Detected in some
ovary:
5.3
HTR4
ENSSSCG00000014428
ENSG00000164270
5-hydroxytryptamine receptor 4
Tissue enhanced
Detected in many
epididymis:
23.1
lens:
25.9
small intestine:
32.0
testis:
33.2
HTR5A
ENSSSCG00000032032
ENSG00000157219
5-hydroxytryptamine receptor 5A
Group enriched
Detected in some
brain:
7.2
salivary gland:
4.0
testis:
12.0
HTR6
ENSSSCG00000025244
ENSG00000158748
5-hydroxytryptamine receptor 6
Tissue enriched
Detected in many
brain:
15.1
HTR7
ENSSSCG00000010459
ENSG00000148680
5-hydroxytryptamine receptor 7
Low tissue specificity
Detected in many
HTRA2
ENSSSCG00000039882
ENSG00000115317
HtrA serine peptidase 2
Low tissue specificity
Detected in all
HTRA3
ENSSSCG00000008723
ENSG00000170801
Serine protease HTRA3 precursor
Tissue enhanced
Detected in many
lens:
46.6
mesothelial tissue:
88.8
HTRA4
ENSSSCG00000015810
ENSG00000169495
HtrA serine peptidase 4
Group enriched
Detected in many
cartilage:
44.7
lymphoid tissue:
22.2
synovial tissue:
57.7
HTT
ENSSSCG00000008697
ENSG00000197386
Huntingtin
Low tissue specificity
Detected in all
HUNK
ENSSSCG00000029392
ENSG00000142149
Hormonally up-regulated Neu-associated kinase
Tissue enhanced
Detected in many
cornea:
35.6
lens:
35.0
ovary:
37.7
HUS1
ENSSSCG00000028523
ENSG00000136273
Checkpoint protein HUS1
Low tissue specificity
Detected in all
HUWE1
ENSSSCG00000012328
ENSG00000086758
HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase
Low tissue specificity
Detected in all
HVCN1
ENSSSCG00000009827
ENSG00000122986
Hydrogen voltage gated channel 1
Group enriched
Detected in many
choroid plexus:
88.8
lymphoid tissue:
24.2
HYAL1
ENSSSCG00000011404
ENSG00000114378
Hyaluronidase-1 precursor
Tissue enhanced
Detected in many
gallbladder:
31.6
large intestine:
32.2
stomach:
37.6
HYAL2
ENSSSCG00000011405
ENSG00000068001
Hyaluronidase-2 precursor
Tissue enhanced
Detected in all
mesothelial tissue:
74.1
HYAL3
ENSSSCG00000011402
ENSG00000186792
Hyaluronidase-3 precursor
Low tissue specificity
Detected in many
HYAL4
ENSSSCG00000016602
ENSG00000106302
Hyaluronoglucosaminidase 4
Tissue enhanced
Detected in many
liver:
19.1
testis:
22.6
HYDIN
ENSSSCG00000040973
ENSG00000157423
HYDIN, axonemal central pair apparatus protein
Tissue enhanced
Detected in some
choroid plexus:
18.5
fallopian tube:
61.3
lung:
21.1
upper respiratory system:
31.1
HYI
ENSSSCG00000003940
ENSG00000178922
Hydroxypyruvate isomerase (putative)
Tissue enhanced
Detected in all
liver:
74.3
HYKK
ENSSSCG00000001755
ENSG00000188266
Hydroxylysine kinase
Tissue enriched
Detected in all
pineal gland:
40.3
HYLS1
ENSSSCG00000024913
ENSG00000198331
HYLS1, centriolar and ciliogenesis associated
Tissue enhanced
Detected in all
testis:
46.5
HYOU1
ENSSSCG00000015106
ENSG00000149428
Hypoxia up-regulated 1
Tissue enhanced
Detected in all
epididymis:
103.3
HYPK
ENSSSCG00000038436
ENSG00000242028
Huntingtin interacting protein K
Low tissue specificity
Detected in all
IAH1
ENSSSCG00000008640
ENSG00000134330
Isoamyl acetate hydrolyzing esterase 1 (putative)
Low tissue specificity
Detected in all
IAPP
ENSSSCG00000000582
ENSG00000121351
Islet amyloid polypeptide
Tissue enhanced
Detected in many
brain:
42.4
choroid plexus:
21.5
upper respiratory system:
20.5
IARS
ENSSSCG00000008068
ENSG00000196305
Isoleucyl-tRNA synthetase
Low tissue specificity
Detected in all
IARS2
ENSSSCG00000010823
ENSG00000067704
Isoleucyl-tRNA synthetase 2, mitochondrial
Low tissue specificity
Detected in all
IBA57
ENSSSCG00000013988
ENSG00000181873
Putative transferase CAF17, mitochondrial
Low tissue specificity
Detected in all
IBSP
ENSSSCG00000009219
ENSG00000029559
Integrin binding sialoprotein
Group enriched
Detected in some
bone marrow:
43.8
cartilage:
19.9
dura mater:
44.2
ovary:
57.5
IBTK
ENSSSCG00000004460
ENSG00000005700
Inhibitor of Bruton tyrosine kinase
Low tissue specificity
Detected in all
ICA1
ENSSSCG00000015346
ENSG00000003147
Islet cell autoantigen 1
Tissue enhanced
Detected in many
testis:
51.4
ICA1L
ENSSSCG00000016115
ENSG00000163596
Islet cell autoantigen 1 like
Group enriched
Detected in many
brain:
16.6
testis:
52.6
ICAM1
ENSSSCG00000013655
ENSG00000090339
Intercellular adhesion molecule 1 precursor
Tissue enhanced
Detected in many
lung:
45.5
ICAM2
ENSSSCG00000039909
ENSG00000108622
Intercellular adhesion molecule 2 precursor
Low tissue specificity
Detected in many
ICAM3
ENSSSCG00000013649
ENSG00000076662
Intercellular adhesion molecule 3 precursor
Tissue enhanced
Detected in many
dura mater:
9.3
lung:
8.6
lymphoid tissue:
21.6
ICAM5
ENSSSCG00000013653
ENSG00000105376
Intercellular adhesion molecule 5
Tissue enriched
Detected in many
brain:
38.1
ICE2
ENSSSCG00000004577
ENSG00000128915
Interactor of little elongation complex ELL subunit 2
Low tissue specificity
Detected in all
ICK
ENSSSCG00000002628
ENSG00000112144
Intestinal cell kinase
Low tissue specificity
Detected in all
ICMT
ENSSSCG00000003369
ENSG00000116237
Protein-S-isoprenylcysteine O-methyltransferase
Low tissue specificity
Detected in all
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