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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
Y
External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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658 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
MTPAP
ENSSSCG00000011018
ENSG00000107951
Poly(A) RNA polymerase, mitochondrial
Low tissue specificity
Detected in all
MTR
ENSSSCG00000010143
ENSG00000116984
5-methyltetrahydrofolate-homocysteine methyltransferase
Low tissue specificity
Detected in all
MTRR
ENSSSCG00000017100
ENSG00000124275
5-methyltetrahydrofolate-homocysteine methyltransferase reductase
Low tissue specificity
Detected in all
MTTP
ENSSSCG00000009179
ENSG00000138823
Microsomal triglyceride transfer protein large subunit precursor
Group enriched
Detected in some
liver:
71.4
small intestine:
24.0
MUT
ENSSSCG00000001732
ENSG00000146085
Methylmalonyl-CoA mutase, mitochondrial precursor
Tissue enhanced
Detected in all
liver:
61.9
MVK
ENSSSCG00000009931
ENSG00000110921
Mevalonate kinase
Tissue enriched
Detected in many
liver:
84.3
na
ENSSSCG00000000719
ENSG00000139180
Tissue enhanced
Detected in all
skeletal muscle:
62.7
na
ENSSSCG00000000905
ENSG00000184752
Tissue enhanced
Detected in all
lens:
108.2
na
ENSSSCG00000000959
ENSG00000133424
Low tissue specificity
Detected in all
na
ENSSSCG00000001596
ENSG00000124615
Tissue enhanced
Detected in all
kidney:
48.2
liver:
53.3
mouth:
50.4
na
ENSSSCG00000001927
ENSG00000213614
Beta-hexosaminidase subunit alpha precursor
Low tissue specificity
Detected in all
na
ENSSSCG00000002759
ENSG00000213380,ENSG00000272617
Low tissue specificity
Detected in all
na
ENSSSCG00000002844
ENSG00000102893
Tissue enhanced
Detected in all
lens:
108.5
skeletal muscle:
69.4
na
ENSSSCG00000002907
ENSG00000126267
Cytochrome c oxidase subunit 6B1
Tissue enhanced
Detected in all
skeletal muscle:
101.0
na
ENSSSCG00000003311
ENSG00000140650
Tissue enriched
Detected in single
retina:
3.9
na
ENSSSCG00000004024
ENSG00000026297
Tissue enhanced
Detected in all
synovial tissue:
65.7
na
ENSSSCG00000004342
ENSG00000123545
Tissue enriched
Detected in many
epididymis:
62.7
na
ENSSSCG00000005247
ENSG00000119139,ENSG00000285130
Tight junction protein ZO-2
Low tissue specificity
Detected in all
na
ENSSSCG00000007089
ENSG00000125871
Low tissue specificity
Detected in all
na
ENSSSCG00000007527
ENSG00000124205
Endothelin-3
Tissue enhanced
Detected in all
cornea:
48.1
na
ENSSSCG00000007738
ENSG00000126522
Tissue enhanced
Detected in all
liver:
49.8
na
ENSSSCG00000007919
ENSG00000033011
Low tissue specificity
Detected in all
na
ENSSSCG00000009347
ENSG00000133116
Group enriched
Detected in some
choroid plexus:
76.4
kidney:
36.2
na
ENSSSCG00000009770
ENSG00000111361
Low tissue specificity
Detected in all
na
ENSSSCG00000010161
ENSG00000168275
Tissue enhanced
Detected in all
lens:
27.8
na
ENSSSCG00000010734
ENSG00000065154
Ornithine aminotransferase, mitochondrial
Low tissue specificity
Detected in all
na
ENSSSCG00000010855
ENSG00000143811
Low tissue specificity
Detected in all
na
ENSSSCG00000012103
ENSG00000101850
Tissue enhanced
Detected in many
bone marrow:
8.3
na
ENSSSCG00000012602
ENSG00000171155
Tissue enhanced
Detected in all
male glands:
53.0
na
ENSSSCG00000012731
ENSG00000010404
Low tissue specificity
Detected in all
na
ENSSSCG00000013720
ENSG00000104774
Low tissue specificity
Detected in all
na
ENSSSCG00000014371
ENSG00000131495
Low tissue specificity
Detected in all
na
ENSSSCG00000015023
ENSG00000086848,ENSG00000258529
Alpha-1,2-mannosyltransferase ALG9
Low tissue specificity
Detected in all
na
ENSSSCG00000015040
ENSG00000150787
Low tissue specificity
Detected in all
na
ENSSSCG00000015405
ENSG00000135218
Platelet glycoprotein 4
Tissue enhanced
Detected in many
adipose tissue:
146.7
aorta:
64.1
heart:
72.5
skeletal muscle:
63.1
na
ENSSSCG00000015691
ENSG00000115850
Group enriched
Detected in some
small intestine:
19.6
testis:
5.6
na
ENSSSCG00000016100
ENSG00000119013
Low tissue specificity
Detected in all
na
ENSSSCG00000017077
ENSG00000135070
Tissue enhanced
Detected in some
heart:
6.4
liver:
6.0
retina:
5.6
na
ENSSSCG00000021998
ENSG00000111700,ENSG00000134538,ENSG00000205754,ENSG00000257046
Solute carrier organic anion transporter family member 1B3
Tissue enriched
Detected in many
liver:
116.2
na
ENSSSCG00000022460
ENSG00000168958
Tissue enhanced
Detected in single
brain:
1.2
na
ENSSSCG00000023155
ENSG00000182372
Protein CLN8
Tissue enhanced
Detected in all
brain:
50.1
na
ENSSSCG00000023277
ENSG00000125356
Tissue enhanced
Detected in all
pineal gland:
87.3
na
ENSSSCG00000023325
ENSG00000114786,ENSG00000243989
Aminoacylase-1
Group enriched
Detected in all
kidney:
111.2
liver:
34.7
na
ENSSSCG00000023643
ENSG00000131828
Tissue enhanced
Detected in all
kidney:
136.6
skeletal muscle:
65.8
na
ENSSSCG00000025007
ENSG00000169599
Tissue enhanced
Detected in all
lens:
60.9
na
ENSSSCG00000025305
ENSG00000171865
Ribonuclease H1
Low tissue specificity
Detected in all
na
ENSSSCG00000026520
ENSG00000101846
Tissue enhanced
Detected in some
brain:
9.8
choroid plexus:
14.3
kidney:
27.7
na
ENSSSCG00000028005
ENSG00000139719
Vacuolar protein sorting-associated protein 33A
Low tissue specificity
Detected in all
na
ENSSSCG00000028539
ENSG00000162735
Tissue enriched
Detected in some
liver:
10.6
na
ENSSSCG00000030013
ENSG00000115850
Tissue enriched
Detected in some
small intestine:
29.7
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