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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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658 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
LCAT
ENSSSCG00000028350
ENSG00000213398
Phosphatidylcholine-sterol acyltransferase precursor
Tissue enhanced
Detected in many
brain:
21.7
liver:
56.4
LDLR
ENSSSCG00000028512
ENSG00000130164
Low-density lipoprotein receptor precursor
Tissue enhanced
Detected in many
adrenal gland:
153.0
ovary:
76.4
LDLRAP1
ENSSSCG00000003549
ENSG00000157978
Low density lipoprotein receptor adaptor protein 1
Tissue enhanced
Detected in all
adrenal gland:
67.3
LIPA
ENSSSCG00000010450
ENSG00000107798
Lysosomal acid lipase/cholesteryl ester hydrolase precursor
Tissue enhanced
Detected in all
ovary:
84.6
LIPC
ENSSSCG00000004596
ENSG00000166035
Hepatic triacylglycerol lipase precursor
Group enriched
Detected in all
liver:
58.1
small intestine:
22.1
LIPE
ENSSSCG00000003018
ENSG00000079435
Lipase E, hormone sensitive type
Tissue enhanced
Detected in many
adipose tissue:
157.0
aorta:
40.5
bone marrow:
57.2
LMBRD1
ENSSSCG00000004272
ENSG00000168216
LMBR1 domain containing 1
Tissue enhanced
Detected in all
brain:
38.6
LMF1
ENSSSCG00000008009
ENSG00000103227
Lipase maturation factor 1
Low tissue specificity
Detected in all
LMNA
ENSSSCG00000006496
ENSG00000160789
Prelamin-A/C
Low tissue specificity
Detected in many
LMNB1
ENSSSCG00000014248
ENSG00000113368
Lamin B1
Tissue enhanced
Detected in all
lymphoid tissue:
52.3
LMNB2
ENSSSCG00000026784
ENSG00000176619
Lamin B2
Low tissue specificity
Detected in all
LPIN1
ENSSSCG00000008624
ENSG00000134324
Phosphatidate phosphatase LPIN1
Tissue enhanced
Detected in all
adipose tissue:
75.1
LPL
ENSSSCG00000040631
ENSG00000175445
Lipoprotein lipase precursor
Tissue enhanced
Detected in many
adipose tissue:
134.0
aorta:
89.4
bone marrow:
101.4
LRMDA
ENSSSCG00000034308
ENSG00000148655
Leucine rich melanocyte differentiation associated
Low tissue specificity
Detected in many
LRPPRC
ENSSSCG00000008452
ENSG00000138095
Leucine rich pentatricopeptide repeat containing
Low tissue specificity
Detected in all
LTC4S
ENSSSCG00000028488
ENSG00000213316
Leukotriene C4 synthase
Tissue enhanced
Detected in many
liver:
56.7
lymphoid tissue:
21.7
LYRM4
ENSSSCG00000031269
ENSG00000214113
LYR motif containing 4
Low tissue specificity
Detected in all
LYRM7
ENSSSCG00000033213
ENSG00000186687
LYR motif containing 7
Low tissue specificity
Detected in all
LZTFL1
ENSSSCG00000011314
ENSG00000163818
Leucine zipper transcription factor like 1
Tissue enhanced
Detected in all
testis:
108.0
MANBA
ENSSSCG00000009166
ENSG00000109323
Mannosidase beta
Low tissue specificity
Detected in all
MAOA
ENSSSCG00000012257
ENSG00000189221
Amine oxidase
Low tissue specificity
Detected in many
MARS2
ENSSSCG00000034494
ENSG00000247626
Methionyl-tRNA synthetase 2, mitochondrial
Low tissue specificity
Detected in all
MAT1A
ENSSSCG00000010337
ENSG00000151224
S-adenosylmethionine synthase
Tissue enriched
Detected in some
liver:
229.1
MCCC1
ENSSSCG00000025942
ENSG00000078070
Methylcrotonoyl-CoA carboxylase 1
Low tissue specificity
Detected in all
MCCC2
ENSSSCG00000016971
ENSG00000131844
Methylcrotonoyl-CoA carboxylase 2
Low tissue specificity
Detected in all
MCEE
ENSSSCG00000035696
ENSG00000124370
Methylmalonyl-CoA epimerase, mitochondrial
Low tissue specificity
Detected in all
MCOLN1
ENSSSCG00000013570
ENSG00000090674
Mucolipin 1
Low tissue specificity
Detected in all
MFSD8
ENSSSCG00000009075
ENSG00000164073
Major facilitator superfamily domain containing 8
Low tissue specificity
Detected in all
MIPEP
ENSSSCG00000009290
ENSG00000027001
Mitochondrial intermediate peptidase
Low tissue specificity
Detected in all
MITF
ENSSSCG00000011514
ENSG00000187098
Sus scrofa microphthalmia-associated transcription factor-like (LOC102167244), mRNA.
Tissue enhanced
Detected in all
cervix:
72.5
MKKS
ENSSSCG00000007064
ENSG00000125863
McKusick-Kaufman syndrome
Low tissue specificity
Detected in all
MKS1
ENSSSCG00000017635
ENSG00000011143
Meckel syndrome, type 1
Low tissue specificity
Detected in all
MLC1
ENSSSCG00000000978
ENSG00000100427
Megalencephalic leukoencephalopathy with subcortical cysts 1
Tissue enriched
Detected in some
brain:
42.7
MMAA
ENSSSCG00000009039
ENSG00000151611
Methylmalonic aciduria (cobalamin deficiency) cblA type
Low tissue specificity
Detected in all
MMAB
ENSSSCG00000009932
ENSG00000139428
Methylmalonic aciduria (cobalamin deficiency) cblB type
Low tissue specificity
Detected in all
MMACHC
ENSSSCG00000037354
ENSG00000132763
Methylmalonic aciduria and homocystinuria type C protein
Low tissue specificity
Detected in all
MMADHC
ENSSSCG00000028646
ENSG00000168288
Methylmalonic aciduria and homocystinuria, cblD type
Tissue enhanced
Detected in all
lens:
37.7
MOCOS
ENSSSCG00000003744
ENSG00000075643
Molybdenum cofactor sulfurase
Tissue enhanced
Detected in all
epididymis:
29.0
MOCS2
ENSSSCG00000016888
ENSG00000164172
Molybdenum cofactor synthesis 2
Low tissue specificity
Detected in all
MOGS
ENSSSCG00000022786
ENSG00000115275
Mannosyl-oligosaccharide glucosidase
Low tissue specificity
Detected in all
MPC1
ENSSSCG00000032916
ENSG00000060762
Mitochondrial pyruvate carrier 1
Low tissue specificity
Detected in all
MPDU1
ENSSSCG00000017955
ENSG00000129255
Mannose-P-dolichol utilization defect 1 protein
Low tissue specificity
Detected in all
MPI
ENSSSCG00000024990
ENSG00000178802
Mannose-6-phosphate isomerase
Low tissue specificity
Detected in all
MRPL3
ENSSSCG00000011179
ENSG00000114686
Mitochondrial ribosomal protein L3
Low tissue specificity
Detected in all
MRPL44
ENSSSCG00000016232
ENSG00000135900
39S ribosomal protein L44, mitochondrial
Low tissue specificity
Detected in all
MRPS22
ENSSSCG00000035771
ENSG00000175110
Mitochondrial ribosomal protein S22
Low tissue specificity
Detected in all
MRPS34
ENSSSCG00000008016
ENSG00000074071
28S ribosomal protein S34, mitochondrial
Low tissue specificity
Detected in all
MTFMT
ENSSSCG00000004543
ENSG00000103707
Methionyl-tRNA formyltransferase, mitochondrial
Low tissue specificity
Detected in all
MTHFR
ENSSSCG00000003428
ENSG00000177000
Methylenetetrahydrofolate reductase
Tissue enriched
Detected in all
epididymis:
94.0
MTO1
ENSSSCG00000004487
ENSG00000135297
Mitochondrial tRNA translation optimization 1
Low tissue specificity
Detected in all
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