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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
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658 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
GTPBP3
ENSSSCG00000038440
ENSG00000130299
GTP binding protein 3, mitochondrial
Low tissue specificity
Detected in all
GUSB
ENSSSCG00000007739
ENSG00000169919
Beta-glucuronidase precursor
Tissue enhanced
Detected in all
ovary:
55.6
GYG1
ENSSSCG00000011698
ENSG00000163754
Glycogenin 1
Tissue enhanced
Detected in all
cornea:
77.3
skeletal muscle:
55.0
GYS1
ENSSSCG00000003154
ENSG00000104812
Glycogen
Tissue enhanced
Detected in all
skeletal muscle:
87.8
GYS2
ENSSSCG00000000577
ENSG00000111713
Glycogen
Tissue enriched
Detected in many
liver:
99.1
HAAO
ENSSSCG00000038660
ENSG00000162882
3-hydroxyanthranilate 3,4-dioxygenase
Group enriched
Detected in many
kidney:
43.2
liver:
112.9
HADH
ENSSSCG00000009150
ENSG00000138796
Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial
Low tissue specificity
Detected in all
HADHA
ENSSSCG00000008571
ENSG00000084754
Trifunctional enzyme subunit alpha, mitochondrial Long-chain enoyl-CoA hydratase Long chain 3-hydroxyacyl-CoA dehydrogenase
Low tissue specificity
Detected in all
HADHB
ENSSSCG00000008569
ENSG00000138029
Tissue enhanced
Detected in all
heart:
90.4
HAL
ENSSSCG00000000892
ENSG00000084110
Histidine ammonia-lyase
Tissue enriched
Detected in all
liver:
49.8
HAMP
ENSSSCG00000035436
ENSG00000105697
Hepcidin
Tissue enriched
Detected in some
liver:
71.2
HCFC1
ENSSSCG00000012793
ENSG00000172534
Host cell factor C1
Low tissue specificity
Detected in all
HEPACAM
ENSSSCG00000015205
ENSG00000165478
Hepatic and glial cell adhesion molecule
Tissue enhanced
Detected in all
pituitary gland:
137.0
HEXB
ENSSSCG00000014073
ENSG00000049860
Hexosaminidase subunit beta
Group enriched
Detected in many
epididymis:
222.2
male glands:
59.9
HFE
ENSSSCG00000037682
ENSG00000010704
Hemochromatosis
Tissue enhanced
Detected in all
choroid plexus:
41.3
HGD
ENSSSCG00000021227
ENSG00000113924
Homogentisate 1,2-dioxygenase
Tissue enriched
Detected in many
liver:
91.2
HIBCH
ENSSSCG00000016049
ENSG00000198130
3-hydroxyisobutyryl-CoA hydrolase
Low tissue specificity
Detected in all
HIKESHI
ENSSSCG00000021210
ENSG00000149196
Hikeshi, heat shock protein nuclear import factor
Tissue enhanced
Detected in all
lens:
60.3
HLCS
ENSSSCG00000012059
ENSG00000159267
Holocarboxylase synthetase
Tissue enriched
Detected in all
lens:
137.6
HMBS
ENSSSCG00000015108
ENSG00000256269
Porphobilinogen deaminase
Low tissue specificity
Detected in all
HMGCL
ENSSSCG00000026025
ENSG00000117305
3-hydroxymethyl-3-methylglutaryl-CoA lyase
Tissue enhanced
Detected in all
liver:
40.5
HMGCS2
ENSSSCG00000036808
ENSG00000134240
Hydroxymethylglutaryl-CoA synthase, mitochondrial
Tissue enriched
Detected in all
large intestine:
116.1
HPD
ENSSSCG00000009805
ENSG00000158104
4-hydroxyphenylpyruvate dioxygenase
Tissue enriched
Detected in some
liver:
217.9
HPS1
ENSSSCG00000010534
ENSG00000107521
Hermansky-Pudlak syndrome 1 protein
Low tissue specificity
Detected in all
HPS3
ENSSSCG00000011699
ENSG00000163755
Hermansky-Pudlak syndrome 3 protein
Low tissue specificity
Detected in all
HPS4
ENSSSCG00000009960
ENSG00000100099
Hermansky-Pudlak syndrome 4 protein
Low tissue specificity
Detected in all
HSD17B10
ENSSSCG00000012327
ENSG00000072506
Hydroxysteroid 17-beta dehydrogenase 10
Tissue enhanced
Detected in all
liver:
114.6
HSD17B4
ENSSSCG00000028431
ENSG00000133835
Peroxisomal multifunctional enzyme type 2
Tissue enhanced
Detected in all
liver:
83.5
testis:
71.4
HTRA2
ENSSSCG00000039882
ENSG00000115317
HtrA serine peptidase 2
Low tissue specificity
Detected in all
HYAL1
ENSSSCG00000011404
ENSG00000114378
Hyaluronidase-1 precursor
Tissue enhanced
Detected in many
gallbladder:
31.6
large intestine:
32.2
stomach:
37.6
IBA57
ENSSSCG00000013988
ENSG00000181873
Putative transferase CAF17, mitochondrial
Low tissue specificity
Detected in all
IDH2
ENSSSCG00000001852
ENSG00000182054
Isocitrate dehydrogenase
Tissue enhanced
Detected in all
heart:
81.1
skeletal muscle:
120.4
IDUA
ENSSSCG00000032262
ENSG00000127415
Iduronidase, alpha-L-
Low tissue specificity
Detected in all
IFT27
ENSSSCG00000000139
ENSG00000100360
Intraflagellar transport 27
Low tissue specificity
Detected in all
IFT74
ENSSSCG00000005124
ENSG00000096872
Intraflagellar transport 74
Tissue enhanced
Detected in all
testis:
31.5
INSR
ENSSSCG00000013566
ENSG00000171105
Insulin receptor
Low tissue specificity
Detected in all
ISCA2
ENSSSCG00000002367
ENSG00000165898
Iron-sulfur cluster assembly 2
Tissue enhanced
Detected in all
epididymis:
41.7
ISCU
ENSSSCG00000023380
ENSG00000136003
Iron-sulfur cluster assembly enzyme
Low tissue specificity
Detected in all
ISPD
ENSSSCG00000015358
ENSG00000214960
Isoprenoid synthase domain containing
Tissue enhanced
Detected in all
choroid plexus:
28.9
IVD
ENSSSCG00000004774
ENSG00000128928
Isovaleryl-CoA dehydrogenase, mitochondrial
Tissue enhanced
Detected in all
liver:
76.3
KCNE3
ENSSSCG00000029323
ENSG00000175538
Potassium voltage-gated channel subfamily E member 3
Tissue enhanced
Detected in many
thyroid gland:
44.7
upper respiratory system:
39.4
KCNJ18
ENSSSCG00000034773
ENSG00000260458
Potassium voltage-gated channel subfamily J member 18
Group enriched
Detected in many
brain:
21.1
lens:
77.9
skeletal muscle:
30.3
KCNJ2
ENSSSCG00000039947
ENSG00000123700
Inward rectifier potassium channel 2
Tissue enhanced
Detected in many
dura mater:
39.5
heart:
56.6
skeletal muscle:
29.9
KCNJ6
ENSSSCG00000012065
ENSG00000157542
Potassium voltage-gated channel subfamily J member 6
Group enriched
Detected in some
brain:
25.2
pituitary gland:
8.7
retina:
6.3
KIF1C
ENSSSCG00000017900
ENSG00000129250
Kinesin family member 1C
Low tissue specificity
Detected in all
KIT
ENSSSCG00000008842
ENSG00000157404
Mast/stem cell growth factor receptor Kit precursor
Tissue enhanced
Detected in many
bone marrow:
36.7
KYNU
ENSSSCG00000015673
ENSG00000115919
Kynureninase
Tissue enhanced
Detected in many
breast:
25.1
liver:
44.6
L2HGDH
ENSSSCG00000005016
ENSG00000087299
L-2-hydroxyglutarate dehydrogenase
Low tissue specificity
Detected in all
LAMP2
ENSSSCG00000012604
ENSG00000005893
Lysosome-associated membrane glycoprotein 2 isoform 1 precursor
Low tissue specificity
Detected in all
LARS
ENSSSCG00000014411
ENSG00000133706
Leucyl-tRNA synthetase
Low tissue specificity
Detected in all
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